Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28198995
Identifier: 28198995
GI number: 28198995
Start: 1299903
End: 1300424
Strand: Reverse
Name: 28198995
Synonym: PD1103
Alternate gene names: NA
Gene position: 1300424-1299903 (Counterclockwise)
Preceding gene: 28198996
Following gene: 28198994
Centisome position: 51.61
GC content: 59.0
Gene sequence:
>522_bases ATGATTGGCATCCACATCCACCCCCACAGCCTCACCGCCATCGCACAAGCACTCAACGCCACTGAAACGCAGATGGAACA GGCCCTGCGTTCGGCCAAAATCAAAATGGCGGCCTGGCTGCGTACCCGCTCCGTGCGCGGACTGAGCGATGCATTGCAAC TCCAACAAAAGATCGTGCGCCGCCGCCTGCGCACCTATCGACAACGCGACCAAATGAAAGTGTGGTACGGCCTGAACCCC GTCCCCCTCCTATGGCTGAACCCCAAAGCCACCCCTAGCGGCGTCAGCGCCCTGGGCGGGCGTCAGATCAAAGGCGCATT CATTGCCACAGTGCGCGGCAAACGGCAGGTACTCAAACGCCTGGGCCGCGCCCGCTACCCCGTGGCCGTTCAAAAAGCAG ACATTTACGCACCCTCCATGACCTATATCGAAAACGGCCTTCTTGACACAGCCACCTTTGAAGCACGCTTTTACACCCTG TTTGAGCACGAACTGCAATGGCGGACACACACACCGACATAA
Upstream 100 bases:
>100_bases ACTACGCCCGCATTGAAGATCGCCACTACCGCCTCACCCACGACCCACAACCGGATGGAACCGGCATGGCCCTCGTGCGG CTGGCCCCGATGGCGCCCCC
Downstream 100 bases:
>100_bases GCTTAGAAACCCTGCATACCGCCATCCGCGACCAAATTGCAGCGCACTTCCCAGACCTGGCCACCGTTGCGTTTTATCAG GACGATGAAGACCACCAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MIGIHIHPHSLTAIAQALNATETQMEQALRSAKIKMAAWLRTRSVRGLSDALQLQQKIVRRRLRTYRQRDQMKVWYGLNP VPLLWLNPKATPSGVSALGGRQIKGAFIATVRGKRQVLKRLGRARYPVAVQKADIYAPSMTYIENGLLDTATFEARFYTL FEHELQWRTHTPT
Sequences:
>Translated_173_residues MIGIHIHPHSLTAIAQALNATETQMEQALRSAKIKMAAWLRTRSVRGLSDALQLQQKIVRRRLRTYRQRDQMKVWYGLNP VPLLWLNPKATPSGVSALGGRQIKGAFIATVRGKRQVLKRLGRARYPVAVQKADIYAPSMTYIENGLLDTATFEARFYTL FEHELQWRTHTPT >Mature_173_residues MIGIHIHPHSLTAIAQALNATETQMEQALRSAKIKMAAWLRTRSVRGLSDALQLQQKIVRRRLRTYRQRDQMKVWYGLNP VPLLWLNPKATPSGVSALGGRQIKGAFIATVRGKRQVLKRLGRARYPVAVQKADIYAPSMTYIENGLLDTATFEARFYTL FEHELQWRTHTPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19763; Mature: 19763
Theoretical pI: Translated: 11.66; Mature: 11.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGIHIHPHSLTAIAQALNATETQMEQALRSAKIKMAAWLRTRSVRGLSDALQLQQKIVR CEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RRLRTYRQRDQMKVWYGLNPVPLLWLNPKATPSGVSALGGRQIKGAFIATVRGKRQVLKR HHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCHHHCCCCEECCEEEEEECCHHHHHHH LGRARYPVAVQKADIYAPSMTYIENGLLDTATFEARFYTLFEHELQWRTHTPT HCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCEECCCC >Mature Secondary Structure MIGIHIHPHSLTAIAQALNATETQMEQALRSAKIKMAAWLRTRSVRGLSDALQLQQKIVR CEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RRLRTYRQRDQMKVWYGLNPVPLLWLNPKATPSGVSALGGRQIKGAFIATVRGKRQVLKR HHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCHHHCCCCEECCEEEEEECCHHHHHHH LGRARYPVAVQKADIYAPSMTYIENGLLDTATFEARFYTLFEHELQWRTHTPT HCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA