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The map label for this gene is ycfF [C]

Identifier: 28198953

GI number: 28198953

Start: 1259905

End: 1260258

Strand: Reverse

Name: ycfF [C]

Synonym: PD1056

Alternate gene names: 28198953

Gene position: 1260258-1259905 (Counterclockwise)

Preceding gene: 28198954

Following gene: 28198948

Centisome position: 50.01

GC content: 50.28

Gene sequence:

>354_bases
ATGTCTATGTCTGAAGAGACTATCTTCGCTAAGATTATCCGTCGTGAAGTTCCGGCTACGATTGTCTATGAAGATGAGGA
AGTGCTGGGTTTCAAGGACATCATGCCGCGAGCACCGGTGCATGTATTGTTTATTCCAAAACGACAGATCATCCCAACTT
TGGATGACTTGCACCCAGAGCAAGGCCCATTGATTGGCAAGCTAGTATTGGCCGCAGCAGAATACGCCAGACGTGAGGGC
TTTGCGCAGGATGGCTACCGTATTGTCATGAATTGTCGGGAGCATGGTGGGCAGACAGTCTTTCACCTCCACCTTCACTT
ACTTGCTGGCGCGCCATTGGGAACGTCGTGGTAA

Upstream 100 bases:

>100_bases
CGCACGCGTTCGGCACCCGTACTGAAGTGGTCTGAACCACATCAAAGTACCCTAAGGCCTTAAGCTTGGTGTATTCCTAT
TTCTGTGAGTGAGTGTCTGT

Downstream 100 bases:

>100_bases
TGCTTGAAACATGCGCCGCCTTGGTGGTCAGCGGCGCGTATCTTGCTCTGGAGTGGGTAGCTCCCTTCACCACCACCAGC
GAGGATAGTTCCAGCCCCAT

Product: histidine triad-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSMSEETIFAKIIRREVPATIVYEDEEVLGFKDIMPRAPVHVLFIPKRQIIPTLDDLHPEQGPLIGKLVLAAAEYARREG
FAQDGYRIVMNCREHGGQTVFHLHLHLLAGAPLGTSW

Sequences:

>Translated_117_residues
MSMSEETIFAKIIRREVPATIVYEDEEVLGFKDIMPRAPVHVLFIPKRQIIPTLDDLHPEQGPLIGKLVLAAAEYARREG
FAQDGYRIVMNCREHGGQTVFHLHLHLLAGAPLGTSW
>Mature_116_residues
SMSEETIFAKIIRREVPATIVYEDEEVLGFKDIMPRAPVHVLFIPKRQIIPTLDDLHPEQGPLIGKLVLAAAEYARREGF
AQDGYRIVMNCREHGGQTVFHLHLHLLAGAPLGTSW

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI14211923, Length=107, Percent_Identity=45.7943925233645, Blast_Score=99, Evalue=8e-22,
Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=44.8598130841121, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787346, Length=112, Percent_Identity=52.6785714285714, Blast_Score=120, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17506713, Length=110, Percent_Identity=48.1818181818182, Blast_Score=112, Evalue=5e-26,
Organism=Drosophila melanogaster, GI28574010, Length=109, Percent_Identity=44.0366972477064, Blast_Score=99, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24581222, Length=109, Percent_Identity=44.0366972477064, Blast_Score=99, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13187; Mature: 13055

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSEETIFAKIIRREVPATIVYEDEEVLGFKDIMPRAPVHVLFIPKRQIIPTLDDLHPE
CCCCHHHHHHHHHHHHCCEEEEECCCHHCCHHHCCCCCCEEEEEECCCCCCCCHHHCCCC
QGPLIGKLVLAAAEYARREGFAQDGYRIVMNCREHGGQTVFHLHLHLLAGAPLGTSW
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCEEEEEEEHHHHCCCCCCCC
>Mature Secondary Structure 
SMSEETIFAKIIRREVPATIVYEDEEVLGFKDIMPRAPVHVLFIPKRQIIPTLDDLHPE
CCCHHHHHHHHHHHHCCEEEEECCCHHCCHHHCCCCCCEEEEEECCCCCCCCHHHCCCC
QGPLIGKLVLAAAEYARREGFAQDGYRIVMNCREHGGQTVFHLHLHLLAGAPLGTSW
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCEEEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]