| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
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The map label for this gene is pmp17G [H]
Identifier: 62185212
GI number: 62185212
Start: 686033
End: 688552
Strand: Direct
Name: pmp17G [H]
Synonym: CAB598
Alternate gene names: 62185212
Gene position: 686033-688552 (Clockwise)
Preceding gene: 62185208
Following gene: 62185224
Centisome position: 59.95
GC content: 42.62
Gene sequence:
>2520_bases ATGAAACATCCAGTCTACTGGTTCTTAATATCCTCGAGCCTATTTGCCTCGAATTCTTTGAGCTTCGCTAACGACGCTCA AACAGCCTTAACTCCCTCCGATAGCTATAATGGAAATGTGACCTCTGAGGAGTTCCAGGTAAAAGAAACTTCATCAGGAA CAACGTATACTTGTGAAGGCAATGTGTGTATCTCCTTTGCAGGGAAAGATTCAGGTCTAAAGAAAAGTTGTTTCTCAGCT ACTGATAACCTTACCTTCCTAGGAAACGGGTATACTCTTTGCTTTGATAATATTACTACTACAGCTAGTAACCCCGGAGC CATTAATGTTCAAGGTCAAGGAAAAACCTTAGGCATCTCAGGATTTTCTTTATTTTCATGTGCTTATTGTCCTCCAGGCA CAACTGGTTACGGAGCTATACAGACTAAAGGCAACACAACTTTAAAAGATAACTCTAGTCTTGTCTTCCATAAAAACTGC TCAACAGCAGAAGGTGGGGCTATCCAGTGTAAAGGAAGCAGTGATGCTGAATTAAAAATAGAAAATAATCAGAATCTGGT TTTCTCAGAAAACTCCTCCACTTCAAAAGGCGGGGCTATTTATGCTGATAAACTCACCATTGTCTCAGGTGGGCCTACAT TATTTTCTAACAACTCTGTATCCAACGGTTCATCCCCTAAAGGCGGAGCTATTAGCATAAAAGATTCAAGTGGTGAATGT AGCCTAACCGCTGATCTCGGAGATATTACCTTCGATGGGAACAAAATCATCAAAACTAGTGGTGGAAGTTCTACAGTAAC AAGAAATTCCATAGATCTCGGCACAGGGAAATTTACAAAGCTACGTGCTAAAGACGGCTTCGGAATTTTCTTCTATGACC CTATTACTGGGGGAGGATCTGATGAACTAAACATTAATAAAAAAGAAACTGTTGATTATACAGGAAAGATCGTCTTCTCA GGTGAAAAATTATCCGATGAAGAAAAAGCACGAGCGGAAAACCTAGCTTCTACTTTCAACCAACCCATCACATTATCAGC AGGATCTCTTGTACTTAAAGATGGTGTATCTGTAACCGCAAAACAAGTAACGCAGGAAGCGGGATCTACCGTTGTCATGG ATCTAGGGACCACATTACAGACGCCTTCTTCAGGTGGAGAAACCATCACCCTAACTAATCTAGATATTAACATCGCCTCG TTGGGGGGGGGGGGGGGTACCTCTCCTGCTAAACTCGCAACAAATACAGCAAGTCAAGCTATAACTATTAACGCTGTCAA TCTAGTCGATGCTGATGGCAATGCTTATGAAGATCCTATTCTTGCTACGTCTAAACCTTTCACAGCAATAGTAGCTACAA CTAACGCTAGTACAGTCACACAGCCTACAGATAATCTAACAAATTATGTCCCTCCTACTCATTACGGTTACCAAGGAAAT TGGACAGTAACTTGGGACACCGAAACAGCTACAAAAACAGCCACTCTAACTTGGGAACAAACTGGCTACTCCCCTAACCC AGAACGTCAAGGACCTTTAGTCCCGAATACTCTTTGGGGTGCATTCTCTGACCTCAGAGCTATACAAAACTTAATGGATA TTAGCGTCAATGGCGCTGACTACCATAGAGGTTTTTGGGTATCCGGTCTAGCTAACTTCTTACACAAAAGTGGCTCTGAT ACTAAACGCAAGTTCCGTCACAATAGCGCCGGATACGCTTTAGGCGTCTACGCAAAAACTCCTTCTGATGATATTTTCAG TGCGGCTTTCTGCCAACTCTTCGGAAAGGACAAAGACTATTTAGTGTCGAAAAACAACGCCAACATTTACGCAGGTTCTC TCTATTATCAGCATATCTCCTATTGGAGCGCTTGGCAGAATCTGCTACAAAACACTATCGGTGCAGAAGCTCCGTTAGTC CTTAACGCACAGTTAACTTATTGTCATGCTTCAAACGACATGAAAACCAACATGACGACTACTTACGCTCCTCGTAAAAC AACGTATGCAGAAATCAAGGGTGATTGGGGTAACGATTGTTTCGGAGTCGAGCTTGGTGCAACTGTGCCTATCCAAACAG AATCTTCTCTCCTATTCGATATGTACTCACCTTTCCTGAAGTTTCAACTTGTGCATACGCACCAAGATGACTTTAAGGAA AACAATAGCGATCAGGGAAGATACTTCGAAAGCAGCAATCTCACCAACCTTTCTCTGCCTATCGGCATCAAGTTTGAGAG ATTTGCTAACAACGATACAGCTTCTTATCATGTCACTGCTGCTTATTCTCCTGATATCGTAAGAAGTAACCCTGACTGTA CTACTTCTCTGTTAGTAAGCCCCGACTCTGCTGTCTGGGTAACGAAAGCCAACAACCTTGCGCGAAGCGCCTTCATGCTA CAAGCAGGAAACTACTTGTCTTTAAGTCACAACATAGAAATCTTCAGCCAGTTCGGTTTCGAGCTCAGGGGATCTTCACG AACCTATAACGTAGATCTCGGATCGAAGATCCAGTTCTAA
Upstream 100 bases:
>100_bases GGAGCAGGGCCTCCCTTTGTCTACTCTAGCTGGTGACCTTGACTTTTAATTATTTTTATGATCGAGTTAGGATATCTCAA ATCACCCAAAGCATGAATTT
Downstream 100 bases:
>100_bases TCTCATCCACCTCTCCTACCCCGTTCCCACGGGGTAGGGCCTCCTCGGCCTGTGACGCTAAGACTCTTCTTCAAACATGA AAAAGCTCACAATCACGAAG
Product: polymorphic outer membrane protein
Products: NA
Alternate protein names: Outer membrane protein 5; Polymorphic membrane protein 10 [H]
Number of amino acids: Translated: 839; Mature: 839
Protein sequence:
>839_residues MKHPVYWFLISSSLFASNSLSFANDAQTALTPSDSYNGNVTSEEFQVKETSSGTTYTCEGNVCISFAGKDSGLKKSCFSA TDNLTFLGNGYTLCFDNITTTASNPGAINVQGQGKTLGISGFSLFSCAYCPPGTTGYGAIQTKGNTTLKDNSSLVFHKNC STAEGGAIQCKGSSDAELKIENNQNLVFSENSSTSKGGAIYADKLTIVSGGPTLFSNNSVSNGSSPKGGAISIKDSSGEC SLTADLGDITFDGNKIIKTSGGSSTVTRNSIDLGTGKFTKLRAKDGFGIFFYDPITGGGSDELNINKKETVDYTGKIVFS GEKLSDEEKARAENLASTFNQPITLSAGSLVLKDGVSVTAKQVTQEAGSTVVMDLGTTLQTPSSGGETITLTNLDINIAS LGGGGGTSPAKLATNTASQAITINAVNLVDADGNAYEDPILATSKPFTAIVATTNASTVTQPTDNLTNYVPPTHYGYQGN WTVTWDTETATKTATLTWEQTGYSPNPERQGPLVPNTLWGAFSDLRAIQNLMDISVNGADYHRGFWVSGLANFLHKSGSD TKRKFRHNSAGYALGVYAKTPSDDIFSAAFCQLFGKDKDYLVSKNNANIYAGSLYYQHISYWSAWQNLLQNTIGAEAPLV LNAQLTYCHASNDMKTNMTTTYAPRKTTYAEIKGDWGNDCFGVELGATVPIQTESSLLFDMYSPFLKFQLVHTHQDDFKE NNSDQGRYFESSNLTNLSLPIGIKFERFANNDTASYHVTAAYSPDIVRSNPDCTTSLLVSPDSAVWVTKANNLARSAFML QAGNYLSLSHNIEIFSQFGFELRGSSRTYNVDLGSKIQF
Sequences:
>Translated_839_residues MKHPVYWFLISSSLFASNSLSFANDAQTALTPSDSYNGNVTSEEFQVKETSSGTTYTCEGNVCISFAGKDSGLKKSCFSA TDNLTFLGNGYTLCFDNITTTASNPGAINVQGQGKTLGISGFSLFSCAYCPPGTTGYGAIQTKGNTTLKDNSSLVFHKNC STAEGGAIQCKGSSDAELKIENNQNLVFSENSSTSKGGAIYADKLTIVSGGPTLFSNNSVSNGSSPKGGAISIKDSSGEC SLTADLGDITFDGNKIIKTSGGSSTVTRNSIDLGTGKFTKLRAKDGFGIFFYDPITGGGSDELNINKKETVDYTGKIVFS GEKLSDEEKARAENLASTFNQPITLSAGSLVLKDGVSVTAKQVTQEAGSTVVMDLGTTLQTPSSGGETITLTNLDINIAS LGGGGGTSPAKLATNTASQAITINAVNLVDADGNAYEDPILATSKPFTAIVATTNASTVTQPTDNLTNYVPPTHYGYQGN WTVTWDTETATKTATLTWEQTGYSPNPERQGPLVPNTLWGAFSDLRAIQNLMDISVNGADYHRGFWVSGLANFLHKSGSD TKRKFRHNSAGYALGVYAKTPSDDIFSAAFCQLFGKDKDYLVSKNNANIYAGSLYYQHISYWSAWQNLLQNTIGAEAPLV LNAQLTYCHASNDMKTNMTTTYAPRKTTYAEIKGDWGNDCFGVELGATVPIQTESSLLFDMYSPFLKFQLVHTHQDDFKE NNSDQGRYFESSNLTNLSLPIGIKFERFANNDTASYHVTAAYSPDIVRSNPDCTTSLLVSPDSAVWVTKANNLARSAFML QAGNYLSLSHNIEIFSQFGFELRGSSRTYNVDLGSKIQF >Mature_839_residues MKHPVYWFLISSSLFASNSLSFANDAQTALTPSDSYNGNVTSEEFQVKETSSGTTYTCEGNVCISFAGKDSGLKKSCFSA TDNLTFLGNGYTLCFDNITTTASNPGAINVQGQGKTLGISGFSLFSCAYCPPGTTGYGAIQTKGNTTLKDNSSLVFHKNC STAEGGAIQCKGSSDAELKIENNQNLVFSENSSTSKGGAIYADKLTIVSGGPTLFSNNSVSNGSSPKGGAISIKDSSGEC SLTADLGDITFDGNKIIKTSGGSSTVTRNSIDLGTGKFTKLRAKDGFGIFFYDPITGGGSDELNINKKETVDYTGKIVFS GEKLSDEEKARAENLASTFNQPITLSAGSLVLKDGVSVTAKQVTQEAGSTVVMDLGTTLQTPSSGGETITLTNLDINIAS LGGGGGTSPAKLATNTASQAITINAVNLVDADGNAYEDPILATSKPFTAIVATTNASTVTQPTDNLTNYVPPTHYGYQGN WTVTWDTETATKTATLTWEQTGYSPNPERQGPLVPNTLWGAFSDLRAIQNLMDISVNGADYHRGFWVSGLANFLHKSGSD TKRKFRHNSAGYALGVYAKTPSDDIFSAAFCQLFGKDKDYLVSKNNANIYAGSLYYQHISYWSAWQNLLQNTIGAEAPLV LNAQLTYCHASNDMKTNMTTTYAPRKTTYAEIKGDWGNDCFGVELGATVPIQTESSLLFDMYSPFLKFQLVHTHQDDFKE NNSDQGRYFESSNLTNLSLPIGIKFERFANNDTASYHVTAAYSPDIVRSNPDCTTSLLVSPDSAVWVTKANNLARSAFML QAGNYLSLSHNIEIFSQFGFELRGSSRTYNVDLGSKIQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR006315 - InterPro: IPR006626 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 89825; Mature: 89825
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHPVYWFLISSSLFASNSLSFANDAQTALTPSDSYNGNVTSEEFQVKETSSGTTYTCEG CCCCEEEEEEECCHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEECC NVCISFAGKDSGLKKSCFSATDNLTFLGNGYTLCFDNITTTASNPGAINVQGQGKTLGIS CEEEEECCCCCCCCHHHHCCCCCEEEEECCEEEEEECEEECCCCCCEEEEECCCCEEEEC GFSLFSCAYCPPGTTGYGAIQTKGNTTLKDNSSLVFHKNCSTAEGGAIQCKGSSDAELKI CCEEEEEECCCCCCCCCEEEEECCCCEEECCCCEEEECCCCCCCCCEEEECCCCCCEEEE ENNQNLVFSENSSTSKGGAIYADKLTIVSGGPTLFSNNSVSNGSSPKGGAISIKDSSGEC ECCCEEEEECCCCCCCCCEEEEEEEEEEECCCEEECCCCCCCCCCCCCCEEEEECCCCCE SLTADLGDITFDGNKIIKTSGGSSTVTRNSIDLGTGKFTKLRAKDGFGIFFYDPITGGGS EEEEECCCEEECCCEEEEECCCCCEEEECCEECCCCCEEEEEECCCCEEEEECCCCCCCC DELNINKKETVDYTGKIVFSGEKLSDEEKARAENLASTFNQPITLSAGSLVLKDGVSVTA CCCCCCCHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCEEEECCCCHHH KQVTQEAGSTVVMDLGTTLQTPSSGGETITLTNLDINIASLGGGGGTSPAKLATNTASQA HHHHHHCCCEEEEECCCEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCE ITINAVNLVDADGNAYEDPILATSKPFTAIVATTNASTVTQPTDNLTNYVPPTHYGYQGN EEEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCEEECCCCCHHCCCCCCCCCCCCC WTVTWDTETATKTATLTWEQTGYSPNPERQGPLVPNTLWGAFSDLRAIQNLMDISVNGAD EEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCC YHRGFWVSGLANFLHKSGSDTKRKFRHNSAGYALGVYAKTPSDDIFSAAFCQLFGKDKDY CCCCEEHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCE LVSKNNANIYAGSLYYQHISYWSAWQNLLQNTIGAEAPLVLNAQLTYCHASNDMKTNMTT EEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCEE TYAPRKTTYAEIKGDWGNDCFGVELGATVPIQTESSLLFDMYSPFLKFQLVHTHQDDFKE EECCCCCEEEEEECCCCCCEEEEEECCEEEECCCCHHHHHHHCCCEEEEEEECCCHHHHC NNSDQGRYFESSNLTNLSLPIGIKFERFANNDTASYHVTAAYSPDIVRSNPDCTTSLLVS CCCCCCCEEECCCCEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC PDSAVWVTKANNLARSAFMLQAGNYLSLSHNIEIFSQFGFELRGSSRTYNVDLGSKIQF CCCEEEEEECCCHHEEEEEEECCCEEEEECCEEEEEECCEEEECCCEEEEECCCCEECC >Mature Secondary Structure MKHPVYWFLISSSLFASNSLSFANDAQTALTPSDSYNGNVTSEEFQVKETSSGTTYTCEG CCCCEEEEEEECCHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEECC NVCISFAGKDSGLKKSCFSATDNLTFLGNGYTLCFDNITTTASNPGAINVQGQGKTLGIS CEEEEECCCCCCCCHHHHCCCCCEEEEECCEEEEEECEEECCCCCCEEEEECCCCEEEEC GFSLFSCAYCPPGTTGYGAIQTKGNTTLKDNSSLVFHKNCSTAEGGAIQCKGSSDAELKI CCEEEEEECCCCCCCCCEEEEECCCCEEECCCCEEEECCCCCCCCCEEEECCCCCCEEEE ENNQNLVFSENSSTSKGGAIYADKLTIVSGGPTLFSNNSVSNGSSPKGGAISIKDSSGEC ECCCEEEEECCCCCCCCCEEEEEEEEEEECCCEEECCCCCCCCCCCCCCEEEEECCCCCE SLTADLGDITFDGNKIIKTSGGSSTVTRNSIDLGTGKFTKLRAKDGFGIFFYDPITGGGS EEEEECCCEEECCCEEEEECCCCCEEEECCEECCCCCEEEEEECCCCEEEEECCCCCCCC DELNINKKETVDYTGKIVFSGEKLSDEEKARAENLASTFNQPITLSAGSLVLKDGVSVTA CCCCCCCHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCEEEECCCCHHH KQVTQEAGSTVVMDLGTTLQTPSSGGETITLTNLDINIASLGGGGGTSPAKLATNTASQA HHHHHHCCCEEEEECCCEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCE ITINAVNLVDADGNAYEDPILATSKPFTAIVATTNASTVTQPTDNLTNYVPPTHYGYQGN EEEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCEEECCCCCHHCCCCCCCCCCCCC WTVTWDTETATKTATLTWEQTGYSPNPERQGPLVPNTLWGAFSDLRAIQNLMDISVNGAD EEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCC YHRGFWVSGLANFLHKSGSDTKRKFRHNSAGYALGVYAKTPSDDIFSAAFCQLFGKDKDY CCCCEEHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCE LVSKNNANIYAGSLYYQHISYWSAWQNLLQNTIGAEAPLVLNAQLTYCHASNDMKTNMTT EEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCEE TYAPRKTTYAEIKGDWGNDCFGVELGATVPIQTESSLLFDMYSPFLKFQLVHTHQDDFKE EECCCCCEEEEEECCCCCCEEEEEECCEEEECCCCHHHHHHHCCCEEEEEEECCCHHHHC NNSDQGRYFESSNLTNLSLPIGIKFERFANNDTASYHVTAAYSPDIVRSNPDCTTSLLVS CCCCCCCEEECCCCEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC PDSAVWVTKANNLARSAFMLQAGNYLSLSHNIEIFSQFGFELRGSSRTYNVDLGSKIQF CCCEEEEEECCCHHEEEEEEECCCEEEEECCEEEEEECCEEEECCCEEEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10539856; 10684935; 10871362; 9864239 [H]