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The map label for this gene is yfdE [H]

Identifier: 23501962

GI number: 23501962

Start: 1056155

End: 1057300

Strand: Reverse

Name: yfdE [H]

Synonym: BR1084

Alternate gene names: 23501962

Gene position: 1057300-1056155 (Counterclockwise)

Preceding gene: 23501963

Following gene: 23501961

Centisome position: 50.16

GC content: 56.89

Gene sequence:

>1146_bases
ATGCAGAACACACCGCTTGACGGTCTCAAGGTGGTCGAACTGGCGCGTATTCTGGCCGGGCCATGGGTTGGCCAGACGCT
CTGCGATCTTGGTGCCGATGTGATCAAGGTCGAAAGCCCTGAGGGTGATGACACACGCACCTGGGGGCCGCCTTTCATTG
ATGTCGAAGGCGAACGGTCGGCTGCGTATTTCCATGCCTGCAATCGCGGCAAACGGTCCATTACAGCCGATTTTCGCACC
GAGGAGGGCAGGGAGCTCGTGCGCCGTCTGGTGGCGGAGGCTGACGTCGTCATCGAGAATTTCAAGCTGGGTGGGCTCGA
CAAATACGGTCTGGATTATGAAAGCCTGAAAGCGATAAATCCGCAGCTCATCTATTGCTCAATCACGGGGTTCGGCCATA
CCGGCCCTTATGCGGAGCGTGCCGGATATGACTTCATGATCCAGGGCATGGGCGGCATCATGGATTTGACCGGCGAGCCA
GACCGCGAGCCGCAGAAAATCGGTGTGGCCTTTGCGGATATCTTTACCGGCCTTTATAGCGTGATTGCGATCCAGTCGGC
CCTTATCATGCGCGCGCGTACCGGCAAGGGCCAGCATATCGATATGGCCTTGTTTGATTGCATGTCGGGGGTGCTGGCCA
ATCAGGCCATGAATTACCTTGCTTCCGGCAAATCGCCAAAGCGCATGGGGAACGCGCATCCAAATATCGCGCCTTATCAG
ACGCTTTCTGTTTCAGATGGTTACTTCATCATCGCCTGTGGCAATGATGGGCAATTTGGAAAGCTTTCTACGCTGCTGGG
TATCGGTGAACTGGCAAAGGACGAGCGTTTCGCTACCAATTCGGCACGCGTCGCCAATCGTGCGGCCCTTACGGCGCTAT
TGGAGGAACGCACAAAACAGTGGAAGCGTGACGACCTGCTGGCAGAGCTTGCGAAAATAGGCGTACCCGCCGGCCCGATC
AATACGGTGGCTGATGTCTTCGCCGATCCGCAATTCAAGGCGAGAGGGATGAAGATCGACCCGCAGGGTGTTCCGGGATT
GCGCACGCCGATCCGCTTCTCTGATGCTGATTTAAAACTCGACAGCCGCTCGCCGAAACTAAATGAACACGGCGCTGCGA
TCCGCGCCGAACTCGACAAAGGCTGA

Upstream 100 bases:

>100_bases
CGGCATTCAGGCGTTCTTCTGATCGTCGGTTCCAAGCCTGCTTTTGGCCCGCTCGCAATTTGCGGGCGGGCTTTCTTATA
TTCATTTGGGATTGCTGAAC

Downstream 100 bases:

>100_bases
AAAGGAAAATCCCGTCTTTAAACGTCCCCCGAACGTTGGGCATCCAGCTTCGGGGGCATGGGATCAAGAGGCCACCTAAA
ACAAAACCCGCTTTCGCGGG

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MQNTPLDGLKVVELARILAGPWVGQTLCDLGADVIKVESPEGDDTRTWGPPFIDVEGERSAAYFHACNRGKRSITADFRT
EEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAINPQLIYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEP
DREPQKIGVAFADIFTGLYSVIAIQSALIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQ
TLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTALLEERTKQWKRDDLLAELAKIGVPAGPI
NTVADVFADPQFKARGMKIDPQGVPGLRTPIRFSDADLKLDSRSPKLNEHGAAIRAELDKG

Sequences:

>Translated_381_residues
MQNTPLDGLKVVELARILAGPWVGQTLCDLGADVIKVESPEGDDTRTWGPPFIDVEGERSAAYFHACNRGKRSITADFRT
EEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAINPQLIYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEP
DREPQKIGVAFADIFTGLYSVIAIQSALIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQ
TLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTALLEERTKQWKRDDLLAELAKIGVPAGPI
NTVADVFADPQFKARGMKIDPQGVPGLRTPIRFSDADLKLDSRSPKLNEHGAAIRAELDKG
>Mature_381_residues
MQNTPLDGLKVVELARILAGPWVGQTLCDLGADVIKVESPEGDDTRTWGPPFIDVEGERSAAYFHACNRGKRSITADFRT
EEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAINPQLIYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEP
DREPQKIGVAFADIFTGLYSVIAIQSALIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQ
TLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTALLEERTKQWKRDDLLAELAKIGVPAGPI
NTVADVFADPQFKARGMKIDPQGVPGLRTPIRFSDADLKLDSRSPKLNEHGAAIRAELDKG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=40.2631578947368, Blast_Score=292, Evalue=4e-79,
Organism=Homo sapiens, GI300863124, Length=335, Percent_Identity=42.6865671641791, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI13376042, Length=335, Percent_Identity=38.5074626865672, Blast_Score=241, Evalue=6e-64,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=35.5263157894737, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266456254, Length=389, Percent_Identity=27.2493573264781, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458393, Length=271, Percent_Identity=30.2583025830258, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI42794625, Length=389, Percent_Identity=27.2493573264781, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458397, Length=262, Percent_Identity=29.7709923664122, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI42822893, Length=181, Percent_Identity=29.8342541436464, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458395, Length=181, Percent_Identity=29.8342541436464, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=39.8936170212766, Blast_Score=290, Evalue=8e-80,
Organism=Escherichia coli, GI1788717, Length=406, Percent_Identity=29.3103448275862, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786222, Length=339, Percent_Identity=26.2536873156342, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=304, Percent_Identity=26.9736842105263, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=202, Percent_Identity=29.7029702970297, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648431, Length=383, Percent_Identity=41.5143603133159, Blast_Score=297, Evalue=9e-81,
Organism=Drosophila melanogaster, GI24585488, Length=307, Percent_Identity=29.6416938110749, Blast_Score=104, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41340; Mature: 41340

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNTPLDGLKVVELARILAGPWVGQTLCDLGADVIKVESPEGDDTRTWGPPFIDVEGERS
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCC
AAYFHACNRGKRSITADFRTEEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAIN
HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCC
PQLIYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEPDREPQKIGVAFADIFTGLYS
CEEEEEEEECCCCCCCCHHHCCCCEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
VIAIQSALIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQ
HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCE
TLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTALLEERTKQ
EEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHH
WKRDDLLAELAKIGVPAGPINTVADVFADPQFKARGMKIDPQGVPGLRTPIRFSDADLKL
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHCCCEEECCCCCCCCCCCCEECCCCEEE
DSRSPKLNEHGAAIRAELDKG
CCCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MQNTPLDGLKVVELARILAGPWVGQTLCDLGADVIKVESPEGDDTRTWGPPFIDVEGERS
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCC
AAYFHACNRGKRSITADFRTEEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAIN
HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCC
PQLIYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEPDREPQKIGVAFADIFTGLYS
CEEEEEEEECCCCCCCCHHHCCCCEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
VIAIQSALIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQ
HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCE
TLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTALLEERTKQ
EEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHH
WKRDDLLAELAKIGVPAGPINTVADVFADPQFKARGMKIDPQGVPGLRTPIRFSDADLKL
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHCCCEEECCCCCCCCCCCCEECCCCEEE
DSRSPKLNEHGAAIRAELDKG
CCCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]