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The map label for this gene is rpe [H]

Identifier: 23501737

GI number: 23501737

Start: 824028

End: 824705

Strand: Reverse

Name: rpe [H]

Synonym: BR0850

Alternate gene names: 23501737

Gene position: 824705-824028 (Counterclockwise)

Preceding gene: 23501738

Following gene: 23501736

Centisome position: 39.13

GC content: 60.32

Gene sequence:

>678_bases
ATGCGCCCCATCGCCATTGCCCCTTCCATTCTTTCCGCCGATTTTGCCCGTCTTGGCGAAGAAGTCGATGCCGTGCTGGA
AGCCGGTGCCGATTGGGTGCATATCGACGTCATGGACGGGCATTTCGTGCCCAACATCACCTTTGGCCCGCAGGTGGTGA
AGGCGATCCGCCCGCGTACCAAGGCATTCTTCGATGCGCATTTGATGATTGCGCCCTGCGATCCCTATCTGGAACCTTTT
GCCGAAGCGGGATGTGATCTCATCACCGTTCATGCGGAAGCCGGGCCGCACACGCATCGCTCGCTGCAATCGATCCGTGC
GCTTGGCAAGAAAGCCGGTCTTGCGCTGAACCCTGCCACGCCCGCCGAGGCGCTCACCAATGTGCTGGATGACCTTGACC
TCATCCTCGTGATGACGGTCAATCCGGGTTTCGGCGGCCAGAAGTTCATCGCGCCGATGCTGGACAAGATCAGGCGCGTG
CGCGAAATGGTCGGCGACCGCCCTATCGACATTGAGGTCGACGGCGGCATTACGCCCGAAACCGCAGGTTCGGTCGTTGC
CGCTGGCGCCAACATTCTCGTGGCCGGTTCGGCGGTCTACAAAGGTAATTCGGTCGAGAGTTACCGTGCCAATATCGACG
CCATTCGTGCTGCGGCCGAAGCCGCGCGTAATCGTTAA

Upstream 100 bases:

>100_bases
CTTAGAGCGGTTCCAACGATTCCGCTTTAACCGGAACCGCTCTAGGATTTTTGCTGTTCCTGTGATACGGGCAAGTCACG
CTGCCAAGGAGACTATTGCC

Downstream 100 bases:

>100_bases
ACCCTCACTTTCCACAGGATGCACCCATGATCCCGCGCTATTCCCGGCCAGAAATGGTCGCCATCTGGTCGCCCGAAACG
AAGTTCCGCATCTGGTTCGA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRPIAIAPSILSADFARLGEEVDAVLEAGADWVHIDVMDGHFVPNITFGPQVVKAIRPRTKAFFDAHLMIAPCDPYLEPF
AEAGCDLITVHAEAGPHTHRSLQSIRALGKKAGLALNPATPAEALTNVLDDLDLILVMTVNPGFGGQKFIAPMLDKIRRV
REMVGDRPIDIEVDGGITPETAGSVVAAGANILVAGSAVYKGNSVESYRANIDAIRAAAEAARNR

Sequences:

>Translated_225_residues
MRPIAIAPSILSADFARLGEEVDAVLEAGADWVHIDVMDGHFVPNITFGPQVVKAIRPRTKAFFDAHLMIAPCDPYLEPF
AEAGCDLITVHAEAGPHTHRSLQSIRALGKKAGLALNPATPAEALTNVLDDLDLILVMTVNPGFGGQKFIAPMLDKIRRV
REMVGDRPIDIEVDGGITPETAGSVVAAGANILVAGSAVYKGNSVESYRANIDAIRAAAEAARNR
>Mature_225_residues
MRPIAIAPSILSADFARLGEEVDAVLEAGADWVHIDVMDGHFVPNITFGPQVVKAIRPRTKAFFDAHLMIAPCDPYLEPF
AEAGCDLITVHAEAGPHTHRSLQSIRALGKKAGLALNPATPAEALTNVLDDLDLILVMTVNPGFGGQKFIAPMLDKIRRV
REMVGDRPIDIEVDGGITPETAGSVVAAGANILVAGSAVYKGNSVESYRANIDAIRAAAEAARNR

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=223, Percent_Identity=43.9461883408072, Blast_Score=181, Evalue=4e-46,
Organism=Homo sapiens, GI219879828, Length=223, Percent_Identity=41.7040358744395, Blast_Score=167, Evalue=5e-42,
Organism=Homo sapiens, GI24307923, Length=178, Percent_Identity=35.3932584269663, Blast_Score=102, Evalue=2e-22,
Organism=Escherichia coli, GI1789788, Length=220, Percent_Identity=51.3636363636364, Blast_Score=210, Evalue=5e-56,
Organism=Escherichia coli, GI1790523, Length=222, Percent_Identity=37.8378378378378, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI1790754, Length=209, Percent_Identity=36.3636363636364, Blast_Score=108, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17552948, Length=230, Percent_Identity=42.6086956521739, Blast_Score=176, Evalue=6e-45,
Organism=Saccharomyces cerevisiae, GI6322341, Length=213, Percent_Identity=44.131455399061, Blast_Score=172, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24586301, Length=195, Percent_Identity=45.6410256410256, Blast_Score=176, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23882; Mature: 23882

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPIAIAPSILSADFARLGEEVDAVLEAGADWVHIDVMDGHFVPNITFGPQVVKAIRPRT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHCHHH
KAFFDAHLMIAPCDPYLEPFAEAGCDLITVHAEAGPHTHRSLQSIRALGKKAGLALNPAT
HHHHEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEECCCC
PAEALTNVLDDLDLILVMTVNPGFGGQKFIAPMLDKIRRVREMVGDRPIDIEVDGGITPE
HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TAGSVVAAGANILVAGSAVYKGNSVESYRANIDAIRAAAEAARNR
CCCCEEECCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPIAIAPSILSADFARLGEEVDAVLEAGADWVHIDVMDGHFVPNITFGPQVVKAIRPRT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHCHHH
KAFFDAHLMIAPCDPYLEPFAEAGCDLITVHAEAGPHTHRSLQSIRALGKKAGLALNPAT
HHHHEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEECCCC
PAEALTNVLDDLDLILVMTVNPGFGGQKFIAPMLDKIRRVREMVGDRPIDIEVDGGITPE
HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TAGSVVAAGANILVAGSAVYKGNSVESYRANIDAIRAAAEAARNR
CCCCEEECCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA