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The map label for this gene is 23501590

Identifier: 23501590

GI number: 23501590

Start: 689711

End: 690400

Strand: Reverse

Name: 23501590

Synonym: BR0703

Alternate gene names: NA

Gene position: 690400-689711 (Counterclockwise)

Preceding gene: 23501591

Following gene: 23501589

Centisome position: 32.75

GC content: 58.55

Gene sequence:

>690_bases
ATGCTGCGCACCTTGGCAGCAGCCCGTGCCATCCTGCTCGCAACCGGGTTTTCAGCAGCCATAGGGTTCAGCCCCGCAAA
AGCGGATGACCGCGATGGCGGGCGCCCCGGCGATTTTGATTTCTATGTTCTGTCATTATCGTGGTCGCCCAGCTATTGCG
CCTCGCAAGGTCCGCGCGCCAATCAGCAGCAATGCGGCGTGCGGCGCCCCTTCGGCTTTGTGGTTCATGGCCTCTGGCCG
CAAAATGAGCGGGGCTATCCGGCGAATTGCCAGGTCGATAATATGCGCAGCCGCGGCAGTTACGTGCCGCGCCGGATCAT
CTCCAGCCTTTCCGACATCATACCTTCGGCAGGCCTCATCGCCCATCAATGGCGCAAGCACGGCAGTTGCTCCGGCCTGC
CTCAAAATGACTATTTCGCAACCGTCCGGAACGCTTTTGAAAAAGTGAATATTCCGCCGAGCCTTCGCAATCTTGCCACC
GAGCGCCGCGTCGATCCCCTTCTCGTTGAAAAGGCCTTCATTGCCGCCAATCCGGGCATGAAGCCTGACGGTATCTCTAT
TGCCTGCAAGCGGAATTACCTTCAGGAAGTCCGCATCTGCATGACACGAGACCTTCAATATCGCAGTTGCGATGAGGTGG
ATGCCAATGCGTGCCGCAGCCGCTCGGTCATCATGCCGGCAATGCAATAA

Upstream 100 bases:

>100_bases
CGCGGCGCTGGGCCGCAATGTCGAATTCTGCGTGGATGGTTTCGACCGCTGGTATGTCTATGACGGACGCTGCCGCGTCC
TCCGTTAAGCGGAGGCTCTC

Downstream 100 bases:

>100_bases
GGCCGGATCTGAACAATCGGATCGGCATTCCAATCTTCATAGTCGAGGACAAACATGACACAGATTCTCTATTCGCCCGC
CTCGCCTTACAGCGCGAAGG

Product: ribonuclease T2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLRTLAAARAILLATGFSAAIGFSPAKADDRDGGRPGDFDFYVLSLSWSPSYCASQGPRANQQQCGVRRPFGFVVHGLWP
QNERGYPANCQVDNMRSRGSYVPRRIISSLSDIIPSAGLIAHQWRKHGSCSGLPQNDYFATVRNAFEKVNIPPSLRNLAT
ERRVDPLLVEKAFIAANPGMKPDGISIACKRNYLQEVRICMTRDLQYRSCDEVDANACRSRSVIMPAMQ

Sequences:

>Translated_229_residues
MLRTLAAARAILLATGFSAAIGFSPAKADDRDGGRPGDFDFYVLSLSWSPSYCASQGPRANQQQCGVRRPFGFVVHGLWP
QNERGYPANCQVDNMRSRGSYVPRRIISSLSDIIPSAGLIAHQWRKHGSCSGLPQNDYFATVRNAFEKVNIPPSLRNLAT
ERRVDPLLVEKAFIAANPGMKPDGISIACKRNYLQEVRICMTRDLQYRSCDEVDANACRSRSVIMPAMQ
>Mature_229_residues
MLRTLAAARAILLATGFSAAIGFSPAKADDRDGGRPGDFDFYVLSLSWSPSYCASQGPRANQQQCGVRRPFGFVVHGLWP
QNERGYPANCQVDNMRSRGSYVPRRIISSLSDIIPSAGLIAHQWRKHGSCSGLPQNDYFATVRNAFEKVNIPPSLRNLAT
ERRVDPLLVEKAFIAANPGMKPDGISIACKRNYLQEVRICMTRDLQYRSCDEVDANACRSRSVIMPAMQ

Specific function: One of the few RNases that cleave the phosphodiester bond between any two nucleotide. Shows a preference for adenylic acid [H]

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Periplasm. Cytoplasm. Note=An RNase I-like form (periplasmic) and RNase I*-like form (cytoplasmic) appear to be isoforms apparently encoded by the same gene. The cytoplasmic form is less active towards natural polymer RNA [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase T2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001568
- InterPro:   IPR018188 [H]

Pfam domain/function: PF00445 Ribonuclease_T2 [H]

EC number: NA

Molecular weight: Translated: 25354; Mature: 25354

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00530 RNASE_T2_1 ; PS00531 RNASE_T2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTLAAARAILLATGFSAAIGFSPAKADDRDGGRPGDFDFYVLSLSWSPSYCASQGPRA
CCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHCCCCCC
NQQQCGVRRPFGFVVHGLWPQNERGYPANCQVDNMRSRGSYVPRRIISSLSDIIPSAGLI
CHHHCCCCCCCCEEEECCCCCCCCCCCCCCEECCCHHCCCHHHHHHHHHHHHHCCCCCHH
AHQWRKHGSCSGLPQNDYFATVRNAFEKVNIPPSLRNLATERRVDPLLVEKAFIAANPGM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
KPDGISIACKRNYLQEVRICMTRDLQYRSCDEVDANACRSRSVIMPAMQ
CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCEECCCCC
>Mature Secondary Structure
MLRTLAAARAILLATGFSAAIGFSPAKADDRDGGRPGDFDFYVLSLSWSPSYCASQGPRA
CCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHCCCCCC
NQQQCGVRRPFGFVVHGLWPQNERGYPANCQVDNMRSRGSYVPRRIISSLSDIIPSAGLI
CHHHCCCCCCCCEEEECCCCCCCCCCCCCCEECCCHHCCCHHHHHHHHHHHHHCCCCCHH
AHQWRKHGSCSGLPQNDYFATVRNAFEKVNIPPSLRNLATERRVDPLLVEKAFIAANPGM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
KPDGISIACKRNYLQEVRICMTRDLQYRSCDEVDANACRSRSVIMPAMQ
CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7685334 [H]