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The map label for this gene is ybdH [H]

Identifier: 23100783

GI number: 23100783

Start: 3465158

End: 3466291

Strand: Reverse

Name: ybdH [H]

Synonym: OB3328

Alternate gene names: 23100783

Gene position: 3466291-3465158 (Counterclockwise)

Preceding gene: 23100784

Following gene: 23100782

Centisome position: 95.48

GC content: 44.53

Gene sequence:

>1134_bases
ATGTCCACATCGATTGTAAAAGGAGCTCCGGGTCATTATCGGATTGGCGCGGATGTCTTGGAGGAAATTCCTGTACTGCT
TGAAGAACTGTCAGTTAATCGTATACAAGTTATCGCAGGGAAGAGATCATGGCAGGCGGCAAAGCCGTATTTGCCTTTTG
TATTAGTGAAGCAAGTAGAAGCGAATATCATCTTTATTGACGGTCATACCACGCTAGAAAAAGCGGATAAAATAGCGGAT
CAGCTTCACCAACATGCGATTGATGCCGTAATTGGTATAGGTGGCGGGACTGCACTGGATATAACGAAAGCCGCAGCTGC
TAAAGCAGAGGTTAAATCGGTTTTAATTCCGACAATTGCTGCGACCTGTGCTGCATGGACACCGCTTAGTGTCTTTTACG
ACAGTAATGGAGCATTTACACACTATACGTATTTTCCATTAGCGACGACACTTGTATTAGTAGAGCCGGCGATTATTGCG
CATGCTCCTATCGAATACTTACGAGCGGGGATTGGTGATACGCTGGCAAAATTTTATGAAGCCGACGCATTAATCGAGAG
TTTTTACCCGAATGAAGAAGTGCCTGTTCCCGTGAAAGTTTCCCAATTCTCCGCTAGTATTTGTCGAGATGTATTGCTGG
AAGACGGAAAAGCAGCACTCGATGCCGTCCGGGATAAACAAGTGACACCGGCATTAATCCGTGTTATCGAGGCGATTATT
ATAACAGGCGGAATGGTAGGCGGATTTGGCGATAAGGCAGGGCGAATTGCCGGGGCACATTCACTACATAATGGATTAAC
GGAAGCCAGCGAGGCTCAACACTTCTTGCACGGGGAGCTTGTGGCATACGGCATCCTTGGTCAATTGGCATTCGAACAAA
AAGAAGAAGAGCTTTTGCGATTACTCGATTTTTATGATCAATGGCAGTTGCCATCTAGTTTACAGGAGATCGGTATTGAT
ATAACTAATACTGATCTCGTCGAAAGGATTATTCAGAAAGCAATTCTGCCGCAAGAGTCGATACATTTTATGAACCGGGA
AGTGACGGCGGAATCTTTAGCAAGTGCGTTACAGCAAGTAGAGAAAAATAATCAAATCTATTACAAGGAAAAAAGAGGAG
AGAAAACATCATGA

Upstream 100 bases:

>100_bases
ATGACTTACGTAGTGTAATGTTATGCCTCTCGATTTCACATCGGGAGGCATTTTTTAGTTTCCCGGAAAAATTCACAACA
TGAGAAAAGAGGAAGGATTT

Downstream 100 bases:

>100_bases
AAAAAGGATTATTAACAGCGATCGTATTTTTAGCAGTAGCACTTTTGGCTGCATGTGGCAGTGAAGAATCTAGCGGGGCA
AGTGAAGGGTTGTACGATGA

Product: glycerol dehydrogenase

Products: glycerone; NADH; H+

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSTSIVKGAPGHYRIGADVLEEIPVLLEELSVNRIQVIAGKRSWQAAKPYLPFVLVKQVEANIIFIDGHTTLEKADKIAD
QLHQHAIDAVIGIGGGTALDITKAAAAKAEVKSVLIPTIAATCAAWTPLSVFYDSNGAFTHYTYFPLATTLVLVEPAIIA
HAPIEYLRAGIGDTLAKFYEADALIESFYPNEEVPVPVKVSQFSASICRDVLLEDGKAALDAVRDKQVTPALIRVIEAII
ITGGMVGGFGDKAGRIAGAHSLHNGLTEASEAQHFLHGELVAYGILGQLAFEQKEEELLRLLDFYDQWQLPSSLQEIGID
ITNTDLVERIIQKAILPQESIHFMNREVTAESLASALQQVEKNNQIYYKEKRGEKTS

Sequences:

>Translated_377_residues
MSTSIVKGAPGHYRIGADVLEEIPVLLEELSVNRIQVIAGKRSWQAAKPYLPFVLVKQVEANIIFIDGHTTLEKADKIAD
QLHQHAIDAVIGIGGGTALDITKAAAAKAEVKSVLIPTIAATCAAWTPLSVFYDSNGAFTHYTYFPLATTLVLVEPAIIA
HAPIEYLRAGIGDTLAKFYEADALIESFYPNEEVPVPVKVSQFSASICRDVLLEDGKAALDAVRDKQVTPALIRVIEAII
ITGGMVGGFGDKAGRIAGAHSLHNGLTEASEAQHFLHGELVAYGILGQLAFEQKEEELLRLLDFYDQWQLPSSLQEIGID
ITNTDLVERIIQKAILPQESIHFMNREVTAESLASALQQVEKNNQIYYKEKRGEKTS
>Mature_376_residues
STSIVKGAPGHYRIGADVLEEIPVLLEELSVNRIQVIAGKRSWQAAKPYLPFVLVKQVEANIIFIDGHTTLEKADKIADQ
LHQHAIDAVIGIGGGTALDITKAAAAKAEVKSVLIPTIAATCAAWTPLSVFYDSNGAFTHYTYFPLATTLVLVEPAIIAH
APIEYLRAGIGDTLAKFYEADALIESFYPNEEVPVPVKVSQFSASICRDVLLEDGKAALDAVRDKQVTPALIRVIEAIII
TGGMVGGFGDKAGRIAGAHSLHNGLTEASEAQHFLHGELVAYGILGQLAFEQKEEELLRLLDFYDQWQLPSSLQEIGIDI
TNTDLVERIIQKAILPQESIHFMNREVTAESLASALQQVEKNNQIYYKEKRGEKTS

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=335, Percent_Identity=42.089552238806, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI87082352, Length=367, Percent_Identity=31.8801089918256, Blast_Score=151, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.1.6

Molecular weight: Translated: 41096; Mature: 40965

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSIVKGAPGHYRIGADVLEEIPVLLEELSVNRIQVIAGKRSWQAAKPYLPFVLVKQVE
CCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHEECC
ANIIFIDGHTTLEKADKIADQLHQHAIDAVIGIGGGTALDITKAAAAKAEVKSVLIPTIA
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATCAAWTPLSVFYDSNGAFTHYTYFPLATTLVLVEPAIIAHAPIEYLRAGIGDTLAKFYE
HHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHH
ADALIESFYPNEEVPVPVKVSQFSASICRDVLLEDGKAALDAVRDKQVTPALIRVIEAII
HHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
ITGGMVGGFGDKAGRIAGAHSLHNGLTEASEAQHFLHGELVAYGILGQLAFEQKEEELLR
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLDFYDQWQLPSSLQEIGIDITNTDLVERIIQKAILPQESIHFMNREVTAESLASALQQV
HHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EKNNQIYYKEKRGEKTS
HHCCCEEEEECCCCCCC
>Mature Secondary Structure 
STSIVKGAPGHYRIGADVLEEIPVLLEELSVNRIQVIAGKRSWQAAKPYLPFVLVKQVE
CCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHEECC
ANIIFIDGHTTLEKADKIADQLHQHAIDAVIGIGGGTALDITKAAAAKAEVKSVLIPTIA
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATCAAWTPLSVFYDSNGAFTHYTYFPLATTLVLVEPAIIAHAPIEYLRAGIGDTLAKFYE
HHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHH
ADALIESFYPNEEVPVPVKVSQFSASICRDVLLEDGKAALDAVRDKQVTPALIRVIEAII
HHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
ITGGMVGGFGDKAGRIAGAHSLHNGLTEASEAQHFLHGELVAYGILGQLAFEQKEEELLR
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLDFYDQWQLPSSLQEIGIDITNTDLVERIIQKAILPQESIHFMNREVTAESLASALQQV
HHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EKNNQIYYKEKRGEKTS
HHCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: glycerol; NAD+

Specific reaction: glycerol + NAD+ = glycerone + NADH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]