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The map label for this gene is msmE [H]

Identifier: 23100009

GI number: 23100009

Start: 2608415

End: 2609743

Strand: Reverse

Name: msmE [H]

Synonym: OB2554

Alternate gene names: 23100009

Gene position: 2609743-2608415 (Counterclockwise)

Preceding gene: 23100010

Following gene: 23100008

Centisome position: 71.88

GC content: 38.98

Gene sequence:

>1329_bases
ATGAAGAAAAGCTGGTATTTACTAATTTTAATACTAGTAATTTCGCTTTTACTGGCAGCTTGTAACTCAGATGAAGAAAG
TGAAGAAGATGGAGATAATGGAAATACAGGGGAAGCTCAAACTGGTGAGATTGCTGGAGAGTTAGAAATACAATATTTTG
TTGGTGGATATGGGGACGCTTGGTGGAAAGAAGTAATAGGAGATTTCCAAGAAGAATATCCCGATGTGAAAATAGTTGAG
CATGCCGGTCCAAATATTAATGAAGAGATGCGATCACGTTGGGTTTCTAATGATCCACCAGATGTTGTTTATATTGATGG
AGCAGGATCGAATGAAACGCAAATGGTGGAAGATGGTCAATTAATGAATCTTACAGAATGGTTAGATGGAATTGAACTGG
AAGGTGGAGATAAGTTACAGGAGAGTTTTATTGTAAATCCGTCTGATTATGATGGAGAAATTTATACATTACCTCTTGTG
TTCGACACGTGGGGAACTTGGTATGATCGTGCATTATTTGAAGAAAAAGGGTATGCAGTTCCTACAGATTTTGAATCATT
TATGGAGTCGATGAGAGAGATTAAAGATGGTGAAGGTATAGAGCCTTTTGTAACGAGCGGTCAGCATCCGTATTATTTTA
TTCGTGGGATGTTATTCCCTGCATTTGCTGCTGCTGGTGGAGAAGAATATCTATCTGACTTAATAAAAGGTGAAGCAGGA
GCCTGGAGTAGTGAAGAAACGTTAGAAATTATGAAGAACGTGGAACAGATGGTTGATGAAGGGATGATTGATGCTGGTTT
GGGAGCGTTAAATCATACACAATCACAAATGAATTTCTTATTACATGATAATGCATTTATACCAGTAGGATTCTGGCTAC
CAAATGAGATGGCTAATGATATACCGGAAGGATTTGATTTTGGATTTATCCCATCACCAATGCAAGAGGCAGGAGAGCCA
TATGCGATTGTTCCAGATTTACGACCTTTAGCAATAGCTGAGAATGCAGAGAATCCGGAAGCAGCAAAAGCATTCGTCGA
GTTTGTATTTACAAGAGAGTATGCGGTATCCTTCTCGGAACATACTGGAGCGATCATGAATTTGACAGAGGTAGATTTAA
CGCAAAGTGATAAAGTTCCTGTCTATCTGACAGAAGCAAATGAAATGATTAATGATCCTTCTATTGTACAAATTTACAAT
AAGCCACACCCTATGAGTGCAGATTTAGAGACGCCGATAGGTAATGCGTTAATGTCATTAATGCTTGGAAATGCTACGGC
TGAACAATTTGTAGAGGAAGCAGAGAAAGCGGCTGAAGCTTACCGATAG

Upstream 100 bases:

>100_bases
TTACATAAAAACCTGAGTAGCTATTTTTGTAAATTATTGGAAATTACATGGGTTGGTCCATGTGTTTCATAGATTATTTA
TTAAAAGGGGGAAGTTTCAG

Downstream 100 bases:

>100_bases
CATATGTGTGAATGAGGCTCGGACATTATTGTCCAGCCTCATTCAGTATATTTTTAAGAAGAGAGTGGTTTGATGGTTCA
GTCCAAAAAGCAAAAATATA

Product: sugar ABC transporter sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKKSWYLLILILVISLLLAACNSDEESEEDGDNGNTGEAQTGEIAGELEIQYFVGGYGDAWWKEVIGDFQEEYPDVKIVE
HAGPNINEEMRSRWVSNDPPDVVYIDGAGSNETQMVEDGQLMNLTEWLDGIELEGGDKLQESFIVNPSDYDGEIYTLPLV
FDTWGTWYDRALFEEKGYAVPTDFESFMESMREIKDGEGIEPFVTSGQHPYYFIRGMLFPAFAAAGGEEYLSDLIKGEAG
AWSSEETLEIMKNVEQMVDEGMIDAGLGALNHTQSQMNFLLHDNAFIPVGFWLPNEMANDIPEGFDFGFIPSPMQEAGEP
YAIVPDLRPLAIAENAENPEAAKAFVEFVFTREYAVSFSEHTGAIMNLTEVDLTQSDKVPVYLTEANEMINDPSIVQIYN
KPHPMSADLETPIGNALMSLMLGNATAEQFVEEAEKAAEAYR

Sequences:

>Translated_442_residues
MKKSWYLLILILVISLLLAACNSDEESEEDGDNGNTGEAQTGEIAGELEIQYFVGGYGDAWWKEVIGDFQEEYPDVKIVE
HAGPNINEEMRSRWVSNDPPDVVYIDGAGSNETQMVEDGQLMNLTEWLDGIELEGGDKLQESFIVNPSDYDGEIYTLPLV
FDTWGTWYDRALFEEKGYAVPTDFESFMESMREIKDGEGIEPFVTSGQHPYYFIRGMLFPAFAAAGGEEYLSDLIKGEAG
AWSSEETLEIMKNVEQMVDEGMIDAGLGALNHTQSQMNFLLHDNAFIPVGFWLPNEMANDIPEGFDFGFIPSPMQEAGEP
YAIVPDLRPLAIAENAENPEAAKAFVEFVFTREYAVSFSEHTGAIMNLTEVDLTQSDKVPVYLTEANEMINDPSIVQIYN
KPHPMSADLETPIGNALMSLMLGNATAEQFVEEAEKAAEAYR
>Mature_442_residues
MKKSWYLLILILVISLLLAACNSDEESEEDGDNGNTGEAQTGEIAGELEIQYFVGGYGDAWWKEVIGDFQEEYPDVKIVE
HAGPNINEEMRSRWVSNDPPDVVYIDGAGSNETQMVEDGQLMNLTEWLDGIELEGGDKLQESFIVNPSDYDGEIYTLPLV
FDTWGTWYDRALFEEKGYAVPTDFESFMESMREIKDGEGIEPFVTSGQHPYYFIRGMLFPAFAAAGGEEYLSDLIKGEAG
AWSSEETLEIMKNVEQMVDEGMIDAGLGALNHTQSQMNFLLHDNAFIPVGFWLPNEMANDIPEGFDFGFIPSPMQEAGEP
YAIVPDLRPLAIAENAENPEAAKAFVEFVFTREYAVSFSEHTGAIMNLTEVDLTQSDKVPVYLTEANEMINDPSIVQIYN
KPHPMSADLETPIGNALMSLMLGNATAEQFVEEAEKAAEAYR

Specific function: Involved in a binding protein-dependent transport system responsible for the uptake of melibiose, raffinose and isomaltotriose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49226; Mature: 49226

Theoretical pI: Translated: 3.71; Mature: 3.71

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSWYLLILILVISLLLAACNSDEESEEDGDNGNTGEAQTGEIAGELEIQYFVGGYGDA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHH
WWKEVIGDFQEEYPDVKIVEHAGPNINEEMRSRWVSNDPPDVVYIDGAGSNETQMVEDGQ
HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCEEECCCC
LMNLTEWLDGIELEGGDKLQESFIVNPSDYDGEIYTLPLVFDTWGTWYDRALFEEKGYAV
EEEHHHHHCCCCCCCCCHHHHCEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCC
PTDFESFMESMREIKDGEGIEPFVTSGQHPYYFIRGMLFPAFAAAGGEEYLSDLIKGEAG
CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
AWSSEETLEIMKNVEQMVDEGMIDAGLGALNHTQSQMNFLLHDNAFIPVGFWLPNEMAND
CCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHCCHHHHHEEEECCCEEEEEECCCHHHHHH
IPEGFDFGFIPSPMQEAGEPYAIVPDLRPLAIAENAENPEAAKAFVEFVFTREYAVSFSE
CCCCCCCCCCCCCHHHCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
HTGAIMNLTEVDLTQSDKVPVYLTEANEMINDPSIVQIYNKPHPMSADLETPIGNALMSL
CCCCEEEEEEECCCCCCCCCEEEECCHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
MLGNATAEQFVEEAEKAAEAYR
HHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSWYLLILILVISLLLAACNSDEESEEDGDNGNTGEAQTGEIAGELEIQYFVGGYGDA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHH
WWKEVIGDFQEEYPDVKIVEHAGPNINEEMRSRWVSNDPPDVVYIDGAGSNETQMVEDGQ
HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCEEECCCC
LMNLTEWLDGIELEGGDKLQESFIVNPSDYDGEIYTLPLVFDTWGTWYDRALFEEKGYAV
EEEHHHHHCCCCCCCCCHHHHCEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCC
PTDFESFMESMREIKDGEGIEPFVTSGQHPYYFIRGMLFPAFAAAGGEEYLSDLIKGEAG
CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
AWSSEETLEIMKNVEQMVDEGMIDAGLGALNHTQSQMNFLLHDNAFIPVGFWLPNEMAND
CCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHCCHHHHHEEEECCCEEEEEECCCHHHHHH
IPEGFDFGFIPSPMQEAGEPYAIVPDLRPLAIAENAENPEAAKAFVEFVFTREYAVSFSE
CCCCCCCCCCCCCHHHCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
HTGAIMNLTEVDLTQSDKVPVYLTEANEMINDPSIVQIYNKPHPMSADLETPIGNALMSL
CCCCEEEEEEECCCCCCCCCEEEECCHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
MLGNATAEQFVEEAEKAAEAYR
HHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]