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The map label for this gene is sinR [H]

Identifier: 23099979

GI number: 23099979

Start: 2579687

End: 2580013

Strand: Reverse

Name: sinR [H]

Synonym: OB2524

Alternate gene names: 23099979

Gene position: 2580013-2579687 (Counterclockwise)

Preceding gene: 23099980

Following gene: 23099978

Centisome position: 71.06

GC content: 30.28

Gene sequence:

>327_bases
TTGATCGGCGAAAAAATAAAACAACTACGCCTAGAAAAAAGAATGTCCATTTCCGAATTAGCGGAAAAAGCAGGAGTCGC
TAAATCATATTTAAGTTCGATTGAGCGTAATCTTCAATCTAATCCTTCTATTCAATTTATAGAAAAAATAAGTAATGTCT
TAGGCGTAACTGTAAATGAAATAATTTTAGAAAATAATAATGATGATGCTGATCTTGATGAAGAATGGATGCAAATTGTT
CAAGAAGCGATGAAATCCGGTGTATCAAAAGAACAATTTAAAGAATACCTTGAATTTAATAAATGGCGTCAGAAAAATAA
TCATTAG

Upstream 100 bases:

>100_bases
GGTTACAGGTCAGAAGGTGTAATTTGTATGAACAACGTACGCAATATAGAACTATTCGCTGCAGTTATGTTATAATTTGC
AGTGAAAGTAGGTGATGAGC

Downstream 100 bases:

>100_bases
TTTGTTAAGTTTAAAATCTTAACAGGCTAATGATTTTTTACAGATGCAGTACATATGAAGTGGCAATTATAGTATTAATG
TATATACTAGAAACGAGATA

Product: post-exponential-phase response transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNEIILENNNDDADLDEEWMQIV
QEAMKSGVSKEQFKEYLEFNKWRQKNNH

Sequences:

>Translated_108_residues
MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNEIILENNNDDADLDEEWMQIV
QEAMKSGVSKEQFKEYLEFNKWRQKNNH
>Mature_108_residues
MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNEIILENNNDDADLDEEWMQIV
QEAMKSGVSKEQFKEYLEFNKWRQKNNH

Specific function: Affects autolysin level and flagellation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Sin domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR012288
- InterPro:   IPR010981 [H]

Pfam domain/function: PF01381 HTH_3; PF08671 SinI [H]

EC number: NA

Molecular weight: Translated: 12558; Mature: 12558

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNE
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
IILENNNDDADLDEEWMQIVQEAMKSGVSKEQFKEYLEFNKWRQKNNH
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNE
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
IILENNNDDADLDEEWMQIVQEAMKSGVSKEQFKEYLEFNKWRQKNNH
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2121898 [H]