Click here to switch to the map view.

The map label for this gene is whiA

Identifier: 23099921

GI number: 23099921

Start: 2522609

End: 2523553

Strand: Reverse

Name: whiA

Synonym: OB2466

Alternate gene names: 23099921

Gene position: 2523553-2522609 (Counterclockwise)

Preceding gene: 23099922

Following gene: 23099920

Centisome position: 69.51

GC content: 33.65

Gene sequence:

>945_bases
ATGTCTTTCGCATCGGAAATTAAAAAAGAATTGACAGCGATAGAAACAGAAGAATGTTGTCAATTAGCAGAACTCGCAGC
CTTGGTCAGAATGAATGGAGCAATTTCTATTTCACGCCAAGGCTATTCTCTAGATGTTCAGACGGAGAATGCAGCAATAG
CGAGGCGTATTTATACCTTGATTAAGGATAACTATTCAATTGCAGTTGAATTACTCGTCCGAAAAAAAATGAAATTAAAA
AAAAATAATGTTTATATTGTTCGATTAAAAGAGGAAGTTCAATTACTTTTAGAAGAACTAGATTTAATAATAAACCAATA
TACTATTGTTCGGACAATCTCAAATAAATATTTGGAAAAGGACTGCTGTAAAAAGTCTTACTTAAGAGGAGCCTTTTTAG
CAGGAGGATCGATGAATAATCCTGAAACCTCCTCTTATCATTTAGAAATCTTTAATTATTATGAAGAACACGCAGAATCC
TTACAGAAGTTGTTAAACTCATATGGTCTACATGCACGATTATTAGCTCGAAAAAATGGCTTCATTGTATATATGAAAGA
AGCTGAGAAGATAACAGAATTCTTAAGTATTATTGGAGCACATAAAGCGCTATTTAAATTTGAAGACGTGAGAATTGTCA
GGGATATGAGGAATTCGGTTAACCGACTTGTGAATTGTGAAACAGCTAACTTGAATAAAACTATAGGAGCGGCGTTTCGA
CAGATTGAGAATATAAAGCTAATAGAAAGAACTGTTGGACTAGATCAATTGCCTGATAAATTACAAGAAATAGCAAAACT
TCGAATACAGTATGAAGATGTTTCATTAAAAGAACTGGGTGAATTGGTTACAAGTGGTGCGATATCAAAATCAGGTGTGA
ATCACCGTCTGAAAAAAATTGATGAGTTTGCTGAAAAGATTAAACGGGGAGAATCCATAACTTAG

Upstream 100 bases:

>100_bases
GCCTGTTTTTGTGCAGTTTATGGAATTAGTATTCAGTGAGATTTACGTCCATTACTAATGAGTAAAGTTTTGCTTATAAG
AAAAAAAGGGGGGGAGTAAT

Downstream 100 bases:

>100_bases
ACTAGTGATGCGGTAATTAGTGTATTATGATATAATACGATTAATTTCATAATATTTATAATTTAATTAAGTAGAGGTTG
GGACAAAAGTAAAACTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSFASEIKKELTAIETEECCQLAELAALVRMNGAISISRQGYSLDVQTENAAIARRIYTLIKDNYSIAVELLVRKKMKLK
KNNVYIVRLKEEVQLLLEELDLIINQYTIVRTISNKYLEKDCCKKSYLRGAFLAGGSMNNPETSSYHLEIFNYYEEHAES
LQKLLNSYGLHARLLARKNGFIVYMKEAEKITEFLSIIGAHKALFKFEDVRIVRDMRNSVNRLVNCETANLNKTIGAAFR
QIENIKLIERTVGLDQLPDKLQEIAKLRIQYEDVSLKELGELVTSGAISKSGVNHRLKKIDEFAEKIKRGESIT

Sequences:

>Translated_314_residues
MSFASEIKKELTAIETEECCQLAELAALVRMNGAISISRQGYSLDVQTENAAIARRIYTLIKDNYSIAVELLVRKKMKLK
KNNVYIVRLKEEVQLLLEELDLIINQYTIVRTISNKYLEKDCCKKSYLRGAFLAGGSMNNPETSSYHLEIFNYYEEHAES
LQKLLNSYGLHARLLARKNGFIVYMKEAEKITEFLSIIGAHKALFKFEDVRIVRDMRNSVNRLVNCETANLNKTIGAAFR
QIENIKLIERTVGLDQLPDKLQEIAKLRIQYEDVSLKELGELVTSGAISKSGVNHRLKKIDEFAEKIKRGESIT
>Mature_313_residues
SFASEIKKELTAIETEECCQLAELAALVRMNGAISISRQGYSLDVQTENAAIARRIYTLIKDNYSIAVELLVRKKMKLKK
NNVYIVRLKEEVQLLLEELDLIINQYTIVRTISNKYLEKDCCKKSYLRGAFLAGGSMNNPETSSYHLEIFNYYEEHAESL
QKLLNSYGLHARLLARKNGFIVYMKEAEKITEFLSIIGAHKALFKFEDVRIVRDMRNSVNRLVNCETANLNKTIGAAFRQ
IENIKLIERTVGLDQLPDKLQEIAKLRIQYEDVSLKELGELVTSGAISKSGVNHRLKKIDEFAEKIKRGESIT

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_OCEIH (Q8ENL5)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693387.1
- ProteinModelPortal:   Q8ENL5
- GeneID:   1017194
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2466
- NMPDR:   fig|221109.1.peg.2465
- HOGENOM:   HBG485718
- OMA:   DSFFGIE
- BioCyc:   OIHE221109:OB2466-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 35891; Mature: 35760

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFASEIKKELTAIETEECCQLAELAALVRMNGAISISRQGYSLDVQTENAAIARRIYTL
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHH
IKDNYSIAVELLVRKKMKLKKNNVYIVRLKEEVQLLLEELDLIINQYTIVRTISNKYLEK
HHCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DCCKKSYLRGAFLAGGSMNNPETSSYHLEIFNYYEEHAESLQKLLNSYGLHARLLARKNG
HHHHHHHHCHHHEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
FIVYMKEAEKITEFLSIIGAHKALFKFEDVRIVRDMRNSVNRLVNCETANLNKTIGAAFR
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QIENIKLIERTVGLDQLPDKLQEIAKLRIQYEDVSLKELGELVTSGAISKSGVNHRLKKI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCHHHHHHHH
DEFAEKIKRGESIT
HHHHHHHHCCCCCC
>Mature Secondary Structure 
SFASEIKKELTAIETEECCQLAELAALVRMNGAISISRQGYSLDVQTENAAIARRIYTL
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHH
IKDNYSIAVELLVRKKMKLKKNNVYIVRLKEEVQLLLEELDLIINQYTIVRTISNKYLEK
HHCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DCCKKSYLRGAFLAGGSMNNPETSSYHLEIFNYYEEHAESLQKLLNSYGLHARLLARKNG
HHHHHHHHCHHHEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
FIVYMKEAEKITEFLSIIGAHKALFKFEDVRIVRDMRNSVNRLVNCETANLNKTIGAAFR
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QIENIKLIERTVGLDQLPDKLQEIAKLRIQYEDVSLKELGELVTSGAISKSGVNHRLKKI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCHHHHHHHH
DEFAEKIKRGESIT
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376