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The map label for this gene is yrrB [H]

Identifier: 23099468

GI number: 23099468

Start: 2037990

End: 2038655

Strand: Reverse

Name: yrrB [H]

Synonym: OB2013

Alternate gene names: 23099468

Gene position: 2038655-2037990 (Counterclockwise)

Preceding gene: 23099469

Following gene: 23099467

Centisome position: 56.15

GC content: 33.33

Gene sequence:

>666_bases
ATGGATGAGAATCAACAAGCAATTAGTTTAATGAAAGAGAAAAAATATCAAGAGGCGGCTGCACTTTTTAACGAAGTAAT
TGAAGAAAATCCGGAAGACCCAACTGGTTATATAAACTTTGGGAATTTATTACTCCAATTAAATGAAACAGATAGGGCAA
AACGGTTTTTTGAAAAAGCAATTGAATTAGATGAGCATGCTGCAACTGCTTATTACGCATTAGGGAACTTATATTTTGAT
AAAGAATTGTTCTCTAATGCACAGCAGTATTTTGAAAAAGCAATAAAAAGTGGTTTAGAAGAAAGTGATGCTTACTTTAT
GCTTGGGATGAGTTTGAAGAATGATGAACAAATCAAACTTTCTCTACCATATTTATTGCGGGCAACGGAGCTCTCAAATA
AAGATGAAACAATACTATTTCAATATGGGCTTGCTCTTGCTCAATTAGAGTATTTAGAGGAAGCTGAGAAAATATTTCAT
CAGGTTCTTAAGCTAAATGAAGATCATAGTGATGCTTTCTATAATTTAGGTGTTATTTCACTATTTCATGATAATGCAGA
AGAGGCTATGCACTATTTTGATCAAGCGTTAGAGATTCAACCAGATCATATGCTTGCTGCAAATGGTAAAAAAACCGTAT
TGGCGTTTTTGGGAGATCAAGAATAA

Upstream 100 bases:

>100_bases
TTCTATGACGGTGAAGTGTGTCTTGGTGGAGGAACGATTGATACAATTATAAAAAATGATCATAAATTAGATTATGTAGG
ATAAAATGGGTGAATCGATA

Downstream 100 bases:

>100_bases
AACCAATTGTAACGGGCAATATCAACCTCACTTCAAGACTGTGAGGTTAAAGTCTGATTCTGTTCAACTTGGGGAAGAAT
GAAAACCCATTGATTGAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDENQQAISLMKEKKYQEAAALFNEVIEENPEDPTGYINFGNLLLQLNETDRAKRFFEKAIELDEHAATAYYALGNLYFD
KELFSNAQQYFEKAIKSGLEESDAYFMLGMSLKNDEQIKLSLPYLLRATELSNKDETILFQYGLALAQLEYLEEAEKIFH
QVLKLNEDHSDAFYNLGVISLFHDNAEEAMHYFDQALEIQPDHMLAANGKKTVLAFLGDQE

Sequences:

>Translated_221_residues
MDENQQAISLMKEKKYQEAAALFNEVIEENPEDPTGYINFGNLLLQLNETDRAKRFFEKAIELDEHAATAYYALGNLYFD
KELFSNAQQYFEKAIKSGLEESDAYFMLGMSLKNDEQIKLSLPYLLRATELSNKDETILFQYGLALAQLEYLEEAEKIFH
QVLKLNEDHSDAFYNLGVISLFHDNAEEAMHYFDQALEIQPDHMLAANGKKTVLAFLGDQE
>Mature_221_residues
MDENQQAISLMKEKKYQEAAALFNEVIEENPEDPTGYINFGNLLLQLNETDRAKRFFEKAIELDEHAATAYYALGNLYFD
KELFSNAQQYFEKAIKSGLEESDAYFMLGMSLKNDEQIKLSLPYLLRATELSNKDETILFQYGLALAQLEYLEEAEKIFH
QVLKLNEDHSDAFYNLGVISLFHDNAEEAMHYFDQALEIQPDHMLAANGKKTVLAFLGDQE

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=200, Percent_Identity=27, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI32307148, Length=200, Percent_Identity=27, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647123, Length=178, Percent_Identity=27.5280898876405, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI161076610, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19920486, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24656717, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI18110006, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 25433; Mature: 25433

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENQQAISLMKEKKYQEAAALFNEVIEENPEDPTGYINFGNLLLQLNETDRAKRFFEKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCCHHHHHHHHHH
IELDEHAATAYYALGNLYFDKELFSNAQQYFEKAIKSGLEESDAYFMLGMSLKNDEQIKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEE
SLPYLLRATELSNKDETILFQYGLALAQLEYLEEAEKIFHQVLKLNEDHSDAFYNLGVIS
ECHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCE
LFHDNAEEAMHYFDQALEIQPDHMLAANGKKTVLAFLGDQE
EECCCHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCC
>Mature Secondary Structure
MDENQQAISLMKEKKYQEAAALFNEVIEENPEDPTGYINFGNLLLQLNETDRAKRFFEKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCCHHHHHHHHHH
IELDEHAATAYYALGNLYFDKELFSNAQQYFEKAIKSGLEESDAYFMLGMSLKNDEQIKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEE
SLPYLLRATELSNKDETILFQYGLALAQLEYLEEAEKIFHQVLKLNEDHSDAFYNLGVIS
ECHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCE
LFHDNAEEAMHYFDQALEIQPDHMLAANGKKTVLAFLGDQE
EECCCHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]