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The map label for this gene is ymfC [H]

Identifier: 23099070

GI number: 23099070

Start: 1654611

End: 1655336

Strand: Direct

Name: ymfC [H]

Synonym: OB1615

Alternate gene names: 23099070

Gene position: 1654611-1655336 (Clockwise)

Preceding gene: 23099069

Following gene: 23099071

Centisome position: 45.57

GC content: 36.09

Gene sequence:

>726_bases
ATGTCTATTCGTGCGGATGCAAGGCATTTATATTTGCAAGTAATCGATGAAATTCGGAAAGAAATTGATAACGGCGTTTA
TCTTGAGAATGAGAAACTCCCATCTGAATATGAATTATCAAAACATTTAGGTGTTTCACGGGCTACATTGAGGGAAGCAC
TTCGAATTCTAGAAGAAGATAATGTAGTGACAAGAAGACATGGTGTAGGAACTTTTGTAAATCCAAAGCCCATTTTCTCA
TCTGGAATTGAAGAACTTACCAGTGTTACGCAGATGATTGAACAATCTGGGAAATCGGCAGGGTCGCAATATTTATCTGC
TGAAGTTGTCCAAGCAACGGATGAAGATCGCTCAAAATTCAACAATCCCTCTCTATCATCGTTATCTAAAATTGAACGTG
TTCGTACGGCTGATAGTGTTCCCGTAGTATTTTGTATTGATAAGATTCCCACTGAATTGATTCCAATCGAGGTATTACGT
GAAGAGGCGTCTATATTTAATGTATTTGAATCCTATACAAAGAAACGTGTTGCATATGCGGTTACATATATTGAACCAGT
AAGTTACCATGATCGAATTTATAATATATTAAATTATGCTTCTGACCAACCGTTACTCTTATTAAAACAAGTGCATTATA
CAAGCGATGACGAGCCTGTACTGTACTCATCTAATTATTTTCGAGCAGATACATTTAGTTTTTATGTCTTACGAAAACGT
GTTTAA

Upstream 100 bases:

>100_bases
ATCATATATGTTAGGGATTTATTTCTTTAGAGAAGAGTGGTAATATAAACTCTAGCATATAAGAAAACGATGCCATATTG
GCAGCTGTGGAGGTGAATAT

Downstream 100 bases:

>100_bases
TGAATGGAGGTAATTTTCGTGTATTTATGCGAAGATTACCTCTTTTTCAGTGCAGTTCGGTGTCCGTTTTCCAGCAACTA
GCTAAAGTACTTATTTCATG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSIRADARHLYLQVIDEIRKEIDNGVYLENEKLPSEYELSKHLGVSRATLREALRILEEDNVVTRRHGVGTFVNPKPIFS
SGIEELTSVTQMIEQSGKSAGSQYLSAEVVQATDEDRSKFNNPSLSSLSKIERVRTADSVPVVFCIDKIPTELIPIEVLR
EEASIFNVFESYTKKRVAYAVTYIEPVSYHDRIYNILNYASDQPLLLLKQVHYTSDDEPVLYSSNYFRADTFSFYVLRKR
V

Sequences:

>Translated_241_residues
MSIRADARHLYLQVIDEIRKEIDNGVYLENEKLPSEYELSKHLGVSRATLREALRILEEDNVVTRRHGVGTFVNPKPIFS
SGIEELTSVTQMIEQSGKSAGSQYLSAEVVQATDEDRSKFNNPSLSSLSKIERVRTADSVPVVFCIDKIPTELIPIEVLR
EEASIFNVFESYTKKRVAYAVTYIEPVSYHDRIYNILNYASDQPLLLLKQVHYTSDDEPVLYSSNYFRADTFSFYVLRKR
V
>Mature_240_residues
SIRADARHLYLQVIDEIRKEIDNGVYLENEKLPSEYELSKHLGVSRATLREALRILEEDNVVTRRHGVGTFVNPKPIFSS
GIEELTSVTQMIEQSGKSAGSQYLSAEVVQATDEDRSKFNNPSLSSLSKIERVRTADSVPVVFCIDKIPTELIPIEVLRE
EASIFNVFESYTKKRVAYAVTYIEPVSYHDRIYNILNYASDQPLLLLKQVHYTSDDEPVLYSSNYFRADTFSFYVLRKRV

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=236, Percent_Identity=28.3898305084746, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=27.3504273504274, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=26.1802575107296, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790118, Length=241, Percent_Identity=24.0663900414938, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27625; Mature: 27493

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRADARHLYLQVIDEIRKEIDNGVYLENEKLPSEYELSKHLGVSRATLREALRILEED
CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHCC
NVVTRRHGVGTFVNPKPIFSSGIEELTSVTQMIEQSGKSAGSQYLSAEVVQATDEDRSKF
CEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHC
NNPSLSSLSKIERVRTADSVPVVFCIDKIPTELIPIEVLREEASIFNVFESYTKKRVAYA
CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTYIEPVSYHDRIYNILNYASDQPLLLLKQVHYTSDDEPVLYSSNYFRADTFSFYVLRKR
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEECCCCEECCHHHEEEEECC
V
C
>Mature Secondary Structure 
SIRADARHLYLQVIDEIRKEIDNGVYLENEKLPSEYELSKHLGVSRATLREALRILEED
CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHCC
NVVTRRHGVGTFVNPKPIFSSGIEELTSVTQMIEQSGKSAGSQYLSAEVVQATDEDRSKF
CEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHC
NNPSLSSLSKIERVRTADSVPVVFCIDKIPTELIPIEVLREEASIFNVFESYTKKRVAYA
CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTYIEPVSYHDRIYNILNYASDQPLLLLKQVHYTSDDEPVLYSSNYFRADTFSFYVLRKR
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEECCCCEECCHHHEEEEECC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]