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The map label for this gene is pdaA [H]

Identifier: 23098873

GI number: 23098873

Start: 1462022

End: 1462954

Strand: Direct

Name: pdaA [H]

Synonym: OB1418

Alternate gene names: 23098873

Gene position: 1462022-1462954 (Clockwise)

Preceding gene: 23098871

Following gene: 23098874

Centisome position: 40.27

GC content: 35.91

Gene sequence:

>933_bases
ATGGCCTATAATGAAACTAGTAATCTATTAAATTCACCTTGGAGGTACTATTTAATGAAGAAATTTCGCCTTAACACCTT
TCTATACATAGCAATATTCTTATGCGTTGTTTTGATAGCGTGTAGTAATGAATCGGATTCTGTCGGAAAAGAAAAACCAG
ATGAAGAAAATGAAACAAATGAAAGTGCCAACGCACAAGACAAGGATGAACCGAAGGAGAATGATGATCAAGATCAATCA
GAAGAAGGGAAAGAAGAAGAATTAGAAAACCAGGAACCAGAATATTACATATCTGAAGAAACTGCGACGGTGCTACCACT
AGACGATGCAAATGAAAATATAGTACTTCTCACAATTGATGATGTTCCTGATGCTAATGCTGTGAAGATGGCGCATACTT
TAAAAGACTTAGGAGTAGGAGCTATATTTTTTGTGAATGGACATTTTATAAATGACGATGATGGTGCAGAAAAATTAAAA
GAAATTCATGACATGGGCTTTTTAATTGGAAATCATACTAATACTCATCCCGTTCTTCCAGAGTTATCAAAAGAGGAACA
AACTGATGAGATTGTTTCTGTAAGTAATCGTGTAGAAGAGATAATTGGCGAGCGTCCAAAATTCTTCCGTGCACCACATG
GGATGAATTCAGACCATTCAAAAGCTATTGCAAAAGAAGAAAATATGACCATTATGAATTGGACGTATGGTTATGACTAT
TTTGAAGCTTATACAGAACCTAAAGCTTTAGCAGAAGCGATGATTACCGGTGAAGGACCTGAAGCAGGTGTCGATTATTC
ATTATTGAAACCAGGAGCGAATTTGCTAATGCATGATCGTGATTGGACGAATGAGGCATTAAAGGATATTGTAGAAGGAT
TACAAAATCAGGGATATGAAATAGTGGATCCTCATTTAATAGAAACATCATAG

Upstream 100 bases:

>100_bases
ATAATTCAAAAAATGGACGACAATTATAAGTATTCAACTTATTTTTATATGTATCATTCATTACCTAAAATAGACATACA
TGATTGAAGGAGGTAATGTA

Downstream 100 bases:

>100_bases
TATGATAGAGAGTTAATCGGTTATGATAACCAATTAACTCTTTTTTTGTTTTATTATGTCATACTAATTTATGTTGACAG
ATTAAATATGTCATAATATA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MAYNETSNLLNSPWRYYLMKKFRLNTFLYIAIFLCVVLIACSNESDSVGKEKPDEENETNESANAQDKDEPKENDDQDQS
EEGKEEELENQEPEYYISEETATVLPLDDANENIVLLTIDDVPDANAVKMAHTLKDLGVGAIFFVNGHFINDDDGAEKLK
EIHDMGFLIGNHTNTHPVLPELSKEEQTDEIVSVSNRVEEIIGERPKFFRAPHGMNSDHSKAIAKEENMTIMNWTYGYDY
FEAYTEPKALAEAMITGEGPEAGVDYSLLKPGANLLMHDRDWTNEALKDIVEGLQNQGYEIVDPHLIETS

Sequences:

>Translated_310_residues
MAYNETSNLLNSPWRYYLMKKFRLNTFLYIAIFLCVVLIACSNESDSVGKEKPDEENETNESANAQDKDEPKENDDQDQS
EEGKEEELENQEPEYYISEETATVLPLDDANENIVLLTIDDVPDANAVKMAHTLKDLGVGAIFFVNGHFINDDDGAEKLK
EIHDMGFLIGNHTNTHPVLPELSKEEQTDEIVSVSNRVEEIIGERPKFFRAPHGMNSDHSKAIAKEENMTIMNWTYGYDY
FEAYTEPKALAEAMITGEGPEAGVDYSLLKPGANLLMHDRDWTNEALKDIVEGLQNQGYEIVDPHLIETS
>Mature_309_residues
AYNETSNLLNSPWRYYLMKKFRLNTFLYIAIFLCVVLIACSNESDSVGKEKPDEENETNESANAQDKDEPKENDDQDQSE
EGKEEELENQEPEYYISEETATVLPLDDANENIVLLTIDDVPDANAVKMAHTLKDLGVGAIFFVNGHFINDDDGAEKLKE
IHDMGFLIGNHTNTHPVLPELSKEEQTDEIVSVSNRVEEIIGERPKFFRAPHGMNSDHSKAIAKEENMTIMNWTYGYDYF
EAYTEPKALAEAMITGEGPEAGVDYSLLKPGANLLMHDRDWTNEALKDIVEGLQNQGYEIVDPHLIETS

Specific function: Required for production of muramic delta-lactam residues in the spore cortex and for germination [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014235 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 35045; Mature: 34914

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYNETSNLLNSPWRYYLMKKFRLNTFLYIAIFLCVVLIACSNESDSVGKEKPDEENETN
CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
ESANAQDKDEPKENDDQDQSEEGKEEELENQEPEYYISEETATVLPLDDANENIVLLTID
CCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCEEEEEEC
DVPDANAVKMAHTLKDLGVGAIFFVNGHFINDDDGAEKLKEIHDMGFLIGNHTNTHPVLP
CCCCCHHHHHHHHHHHCCCCEEEEEECEEECCCCHHHHHHHHHHHHHEECCCCCCCCCCC
ELSKEEQTDEIVSVSNRVEEIIGERPKFFRAPHGMNSDHSKAIAKEENMTIMNWTYGYDY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCCEEEEEECCCHH
FEAYTEPKALAEAMITGEGPEAGVDYSLLKPGANLLMHDRDWTNEALKDIVEGLQNQGYE
HHHHCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCE
IVDPHLIETS
ECCCEEECCC
>Mature Secondary Structure 
AYNETSNLLNSPWRYYLMKKFRLNTFLYIAIFLCVVLIACSNESDSVGKEKPDEENETN
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
ESANAQDKDEPKENDDQDQSEEGKEEELENQEPEYYISEETATVLPLDDANENIVLLTID
CCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCEEEEEEC
DVPDANAVKMAHTLKDLGVGAIFFVNGHFINDDDGAEKLKEIHDMGFLIGNHTNTHPVLP
CCCCCHHHHHHHHHHHCCCCEEEEEECEEECCCCHHHHHHHHHHHHHEECCCCCCCCCCC
ELSKEEQTDEIVSVSNRVEEIIGERPKFFRAPHGMNSDHSKAIAKEENMTIMNWTYGYDY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCCEEEEEECCCHH
FEAYTEPKALAEAMITGEGPEAGVDYSLLKPGANLLMHDRDWTNEALKDIVEGLQNQGYE
HHHHCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCE
IVDPHLIETS
ECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 12374835 [H]