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The map label for this gene is ydcN [C]

Identifier: 23098799

GI number: 23098799

Start: 1387690

End: 1388259

Strand: Direct

Name: ydcN [C]

Synonym: OB1344

Alternate gene names: 23098799

Gene position: 1387690-1388259 (Clockwise)

Preceding gene: 23098798

Following gene: 23098800

Centisome position: 38.22

GC content: 38.07

Gene sequence:

>570_bases
ATGGTTCCCATCGACCTGCAAAGTATTGGAGATAAAATTAAGCAAGTTCGTCTAAGAAATAAAAAAACACAACAACAGAT
CGCAGATGAGTGTGGGATTTCCAAAAGCCTTCTATCGAAAATAGAAAACGGTCAAACGGCATCAGCAATCGCTACCTTAT
CGAAGATTTCAGATGCTTTAAAGGTTCCGTTAGCATGGTTACTTGATGATAAGGAAGAACAAGACTTAGTTATTCAACGA
AAATATAATCGTCCTTCAAAAGTCGGTGATGAAAGTATGGGGTACTCATATGAGTTACTTGCTAATCGTTCTAAGTATAG
TGGCATTGAACCTACCATCGTACATGTTACCCCAAAACATCGAAATCTACGTCAGGATAAGACATACACGCACTCGCAAG
ATGAATTTATTTACATATTAGAAGGTGAGATTGAACTGCTCTATAACGGCGAGAAGCAATTTTTAGAAAAAGGGGATAGT
GCTTATTTTGCTGGTTCAAAACCACATCTGTTTTTGCCGGTAAATGATCGCGGTGCCATGGTGCTGACATGTTTTATTGA
TCAAATATGA

Upstream 100 bases:

>100_bases
TGGTGAGTAGTGAAAAGCCTCACTTTATCTATAAATATGGATTGACTCGTAAACCATGCTAGATTATGATTAGATTGATT
TTAATTAAATTATGGAAGGA

Downstream 100 bases:

>100_bases
TTGGATAAGAGAGGATATAAATGGAAAATGAATGTGTGTTTTGTAAAGTAGAAATTGACCCATCACAGTCTATTATTCTA
TCCAATGAATATTCATTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family; Cupin Domain Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Transcriptional Regulator HTH_3 Family; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Barrel Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MVPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKVPLAWLLDDKEEQDLVIQR
KYNRPSKVGDESMGYSYELLANRSKYSGIEPTIVHVTPKHRNLRQDKTYTHSQDEFIYILEGEIELLYNGEKQFLEKGDS
AYFAGSKPHLFLPVNDRGAMVLTCFIDQI

Sequences:

>Translated_189_residues
MVPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKVPLAWLLDDKEEQDLVIQR
KYNRPSKVGDESMGYSYELLANRSKYSGIEPTIVHVTPKHRNLRQDKTYTHSQDEFIYILEGEIELLYNGEKQFLEKGDS
AYFAGSKPHLFLPVNDRGAMVLTCFIDQI
>Mature_189_residues
MVPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKVPLAWLLDDKEEQDLVIQR
KYNRPSKVGDESMGYSYELLANRSKYSGIEPTIVHVTPKHRNLRQDKTYTHSQDEFIYILEGEIELLYNGEKQFLEKGDS
AYFAGSKPHLFLPVNDRGAMVLTCFIDQI

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21433; Mature: 21433

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDAL
CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
KVPLAWLLDDKEEQDLVIQRKYNRPSKVGDESMGYSYELLANRSKYSGIEPTIVHVTPKH
HCCHHEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCC
RNLRQDKTYTHSQDEFIYILEGEIELLYNGEKQFLEKGDSAYFAGSKPHLFLPVNDRGAM
CCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCEEECCCCCEEEEEECCCCCE
VLTCFIDQI
EEEEEECCC
>Mature Secondary Structure
MVPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDAL
CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
KVPLAWLLDDKEEQDLVIQRKYNRPSKVGDESMGYSYELLANRSKYSGIEPTIVHVTPKH
HCCHHEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCC
RNLRQDKTYTHSQDEFIYILEGEIELLYNGEKQFLEKGDSAYFAGSKPHLFLPVNDRGAM
CCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCEEECCCCCEEEEEECCCCCE
VLTCFIDQI
EEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA