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The map label for this gene is yrpE [H]

Identifier: 23098733

GI number: 23098733

Start: 1320231

End: 1321235

Strand: Direct

Name: yrpE [H]

Synonym: OB1278

Alternate gene names: 23098733

Gene position: 1320231-1321235 (Clockwise)

Preceding gene: 23098731

Following gene: 23098734

Centisome position: 36.36

GC content: 36.92

Gene sequence:

>1005_bases
ATGAAGAAAATATGGGGAAAGGGACTTAGCGTATTATTACTAAGTTTACTATTTATAACGGGCTGCCAATCAGCAGGCGA
CAATTCTTCTGAAGACGGTGCAAATGCTGAAGAAGAACATAATCATAGTCATGAGGTAGAGATTGGAGATGCACCAGAAA
ATATAAAAGTTGAAGGAGTATCTGATCATTATCATACGGGTGATTTAATTAAATTAACTGCAGAGCTAGAAGAAGATAGT
GAATTTGATCATTGGCATTGGTACACAAGAAATTCATCTGATGATGAGTGGGAAGCAGTACCTGAATTAGATGATAATAA
ATTTTTTGGCGATGCGGAAACGAACGGCCAACAAATTATAGCAGTAATGTTTAATGATGATCACGAACCATATGCTCAAT
CAGAAGTTATAGAAGTGGTAATTGATGATCACGGACATGGACATAGTCATGCTCATGATGAAGAATCTCAACAAATTTAT
GATGGTTATTTTGAAGATGAACAAGTGGAAGATCGTACTTTAGGAGACTGGGAAGGCGATTGGCAATCTGTATACCCTTT
ACATCAAAACGGTACACTTGATGAAGTTTATGCACACAAAGCTGAAGAAAGTGATGACATGACAGCAGAAGAATACAAAG
CGTATTATGAAACTGGTTATGTAACAGACGTTCATAGAATTGTGATTGATGGTAATGAAGTTACTTTCTTTGAAGAAGAG
GAAGAAAAAACTGGTGAGTACCAATATGATGGTTATGAAATCCTCAATTATGAAGCAGGAAATCGTGGAGTAAGATTTAT
ATTTAAGCTAGAGGAAGAGACGGAAGGCTTACCAACTTACATTCAATTTAGTGATCATTCGATATTCCCAACAGACTCTG
GACATTACCATCTTTATTGGGGAGATGACAGACAAGCCTTGTTAGAAGAAGTGGAACACTGGCCAACATACTATCCATCT
GAAATGAGTGAAGAAGATATCGTTCATGAGATGATTGCGCACTAA

Upstream 100 bases:

>100_bases
TTCAAAAATTATCTTGACGGTTATATAACTGCTATGTATAATTTAAATCGTAACCATTACGAATCGTAATCATTACGATT
ACATAAAGGAGAGAATGTGT

Downstream 100 bases:

>100_bases
TATGTTTATAAGTAGAGAATCCGATATTTATTGGGTTCTCTTTTTTTATATGAAAATATTAAAAGGAATAAAGGATATAA
ATATAGAAATAATACTATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKKIWGKGLSVLLLSLLFITGCQSAGDNSSEDGANAEEEHNHSHEVEIGDAPENIKVEGVSDHYHTGDLIKLTAELEEDS
EFDHWHWYTRNSSDDEWEAVPELDDNKFFGDAETNGQQIIAVMFNDDHEPYAQSEVIEVVIDDHGHGHSHAHDEESQQIY
DGYFEDEQVEDRTLGDWEGDWQSVYPLHQNGTLDEVYAHKAEESDDMTAEEYKAYYETGYVTDVHRIVIDGNEVTFFEEE
EEKTGEYQYDGYEILNYEAGNRGVRFIFKLEEETEGLPTYIQFSDHSIFPTDSGHYHLYWGDDRQALLEEVEHWPTYYPS
EMSEEDIVHEMIAH

Sequences:

>Translated_334_residues
MKKIWGKGLSVLLLSLLFITGCQSAGDNSSEDGANAEEEHNHSHEVEIGDAPENIKVEGVSDHYHTGDLIKLTAELEEDS
EFDHWHWYTRNSSDDEWEAVPELDDNKFFGDAETNGQQIIAVMFNDDHEPYAQSEVIEVVIDDHGHGHSHAHDEESQQIY
DGYFEDEQVEDRTLGDWEGDWQSVYPLHQNGTLDEVYAHKAEESDDMTAEEYKAYYETGYVTDVHRIVIDGNEVTFFEEE
EEKTGEYQYDGYEILNYEAGNRGVRFIFKLEEETEGLPTYIQFSDHSIFPTDSGHYHLYWGDDRQALLEEVEHWPTYYPS
EMSEEDIVHEMIAH
>Mature_334_residues
MKKIWGKGLSVLLLSLLFITGCQSAGDNSSEDGANAEEEHNHSHEVEIGDAPENIKVEGVSDHYHTGDLIKLTAELEEDS
EFDHWHWYTRNSSDDEWEAVPELDDNKFFGDAETNGQQIIAVMFNDDHEPYAQSEVIEVVIDDHGHGHSHAHDEESQQIY
DGYFEDEQVEDRTLGDWEGDWQSVYPLHQNGTLDEVYAHKAEESDDMTAEEYKAYYETGYVTDVHRIVIDGNEVTFFEEE
EEKTGEYQYDGYEILNYEAGNRGVRFIFKLEEETEGLPTYIQFSDHSIFPTDSGHYHLYWGDDRQALLEEVEHWPTYYPS
EMSEEDIVHEMIAH

Specific function: May Be Involved In Stress Response. [C]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=202, Percent_Identity=45.049504950495, Blast_Score=185, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 38663; Mature: 38663

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIWGKGLSVLLLSLLFITGCQSAGDNSSEDGANAEEEHNHSHEVEIGDAPENIKVEGV
CCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCEEEEEC
SDHYHTGDLIKLTAELEEDSEFDHWHWYTRNSSDDEWEAVPELDDNKFFGDAETNGQQII
CCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEE
AVMFNDDHEPYAQSEVIEVVIDDHGHGHSHAHDEESQQIYDGYFEDEQVEDRTLGDWEGD
EEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
WQSVYPLHQNGTLDEVYAHKAEESDDMTAEEYKAYYETGYVTDVHRIVIDGNEVTFFEEE
CHHCCEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCEEEEEECC
EEKTGEYQYDGYEILNYEAGNRGVRFIFKLEEETEGLPTYIQFSDHSIFPTDSGHYHLYW
HHCCCCEECCCEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCEECCCCCCCEEEEE
GDDRQALLEEVEHWPTYYPSEMSEEDIVHEMIAH
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKKIWGKGLSVLLLSLLFITGCQSAGDNSSEDGANAEEEHNHSHEVEIGDAPENIKVEGV
CCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCEEEEEC
SDHYHTGDLIKLTAELEEDSEFDHWHWYTRNSSDDEWEAVPELDDNKFFGDAETNGQQII
CCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEE
AVMFNDDHEPYAQSEVIEVVIDDHGHGHSHAHDEESQQIYDGYFEDEQVEDRTLGDWEGD
EEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
WQSVYPLHQNGTLDEVYAHKAEESDDMTAEEYKAYYETGYVTDVHRIVIDGNEVTFFEEE
CHHCCEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCEEEEEECC
EEKTGEYQYDGYEILNYEAGNRGVRFIFKLEEETEGLPTYIQFSDHSIFPTDSGHYHLYW
HHCCCCEECCCEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCEECCCCCCCEEEEE
GDDRQALLEEVEHWPTYYPSEMSEEDIVHEMIAH
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]