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The map label for this gene is yfiR [H]

Identifier: 23097975

GI number: 23097975

Start: 552830

End: 553441

Strand: Direct

Name: yfiR [H]

Synonym: OB0520

Alternate gene names: 23097975

Gene position: 552830-553441 (Clockwise)

Preceding gene: 23097974

Following gene: 23097984

Centisome position: 15.23

GC content: 36.93

Gene sequence:

>612_bases
ATGGCTCCACGAATTTCTGATGAAGAAAAAGAAGCACGCAGAGAACATTTATTGGAATCTGCTTTGGAGTGTTTCTCCGC
CAAGGGATACTATGCATCAACAGTCGACGATATAGTTCGATATTCGAATTTAAGTAAGGGATCAGTCTACAACTACTTCA
AAAGCAAGGAAGAAATTTTTATTCATTTGCTTCAGAAAAAACGTCAGGAAATGGTAGAAGAGCTTACGATTAAATTAGCA
AAAATCGATAGTCCACTAGAAAAACTGAAATATTGGATCCGAGAAGATATTCCGTACAGTCTGGAAAAGAAAAAATTTAT
GCGTGTACATGTTGAGTTTTGGTTATATTCCACAGACTCACCAGAAGTTCAACATATTTTAGTTGAACGGTTTGATGATA
TGTTTGGATTGACGAAAGAGATTATTGAGCAAGGACAGAAATTAGGGGAAATCAAGCCAGATATAGATGCTGAGGCAGCT
TCATCTATGTTTTGGTCCTTGCATGATGGAATTTGGTTACACGCTGTTATTGGTTATGACGAGGCGAAGTTAGAGGCAAG
TATTAAAGAAATGGAAAGCGTGCTTATCACATATTTAACAGCAAATGCCTAA

Upstream 100 bases:

>100_bases
AGGGTTCTTTTTTTTTGAAAATAAAAGGGTTGTAAATTGTGTCAAAAAAGACTACAATTTATATAAACTATCCAGTCAGT
TTTAATAAAGAGGTGTAATT

Downstream 100 bases:

>100_bases
ATTTGGAATCATTTTTGATGGTTCCTCATATATTAAGAAACTGACCGGTCATTTTAATAAAGGAAGGTGAAAGCAATGTT
AAAGAAATTATTTAGATATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAPRISDEEKEARREHLLESALECFSAKGYYASTVDDIVRYSNLSKGSVYNYFKSKEEIFIHLLQKKRQEMVEELTIKLA
KIDSPLEKLKYWIREDIPYSLEKKKFMRVHVEFWLYSTDSPEVQHILVERFDDMFGLTKEIIEQGQKLGEIKPDIDAEAA
SSMFWSLHDGIWLHAVIGYDEAKLEASIKEMESVLITYLTANA

Sequences:

>Translated_203_residues
MAPRISDEEKEARREHLLESALECFSAKGYYASTVDDIVRYSNLSKGSVYNYFKSKEEIFIHLLQKKRQEMVEELTIKLA
KIDSPLEKLKYWIREDIPYSLEKKKFMRVHVEFWLYSTDSPEVQHILVERFDDMFGLTKEIIEQGQKLGEIKPDIDAEAA
SSMFWSLHDGIWLHAVIGYDEAKLEASIKEMESVLITYLTANA
>Mature_202_residues
APRISDEEKEARREHLLESALECFSAKGYYASTVDDIVRYSNLSKGSVYNYFKSKEEIFIHLLQKKRQEMVEELTIKLAK
IDSPLEKLKYWIREDIPYSLEKKKFMRVHVEFWLYSTDSPEVQHILVERFDDMFGLTKEIIEQGQKLGEIKPDIDAEAAS
SMFWSLHDGIWLHAVIGYDEAKLEASIKEMESVLITYLTANA

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23707; Mature: 23576

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRISDEEKEARREHLLESALECFSAKGYYASTVDDIVRYSNLSKGSVYNYFKSKEEIF
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
IHLLQKKRQEMVEELTIKLAKIDSPLEKLKYWIREDIPYSLEKKKFMRVHVEFWLYSTDS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEEECCC
PEVQHILVERFDDMFGLTKEIIEQGQKLGEIKPDIDAEAASSMFWSLHDGIWLHAVIGYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEHEECCC
EAKLEASIKEMESVLITYLTANA
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
APRISDEEKEARREHLLESALECFSAKGYYASTVDDIVRYSNLSKGSVYNYFKSKEEIF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
IHLLQKKRQEMVEELTIKLAKIDSPLEKLKYWIREDIPYSLEKKKFMRVHVEFWLYSTDS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHEEEEEEEEECCC
PEVQHILVERFDDMFGLTKEIIEQGQKLGEIKPDIDAEAASSMFWSLHDGIWLHAVIGYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEHEECCC
EAKLEASIKEMESVLITYLTANA
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]