Click here to switch to the map view.

The map label for this gene is tsgA [H]

Identifier: 22127817

GI number: 22127817

Start: 4402293

End: 4403477

Strand: Reverse

Name: tsgA [H]

Synonym: y3947

Alternate gene names: 22127817

Gene position: 4403477-4402293 (Counterclockwise)

Preceding gene: 22127819

Following gene: 22127815

Centisome position: 95.71

GC content: 47.68

Gene sequence:

>1185_bases
ATGAACAACAGCAATCGCATTCGGCTCACTTGGATCAGTTACTTGTCTTACGCCCTTACTGGCGCGTTAGTTATTGTCAC
CGGGATTGTGATGGGGAATATCGCAGAGTATTTCAATCTGCCTATTGCCAGTATGAGTAACACATTTACTTTTCTTAACG
CGGGTATTTTAATTTCTATTTTCCTCAATGCCTGGTTGATGGAAATCATCCCGTTAAAACGCCAGTTGGTCTTTGGTTTC
ATTTTGATGTTGATCGCTATTGCCGGATTGATGGTCGGCCATAATTTAATGATCTTCTCAATCAGCATGTTTATTTTCGG
GGTGGTCAGCGGGATTACCATGTCGATAGGCACCTTCTTGGTCACCCATATGTACGAGGGTCGCCAGCGCGGTTCACGAC
TGCTGTTTACCGACTCCTTTTTCAGTATGGCGGGGATGATTTTCCCAATCGCGGCAGCCATGCTGCTGGCGCGTCACATT
GAATGGTATTGGGTCTACGCCTGCATCGGCCTATTGTATGTCGGTATTTTCGTGCTGACTCTGTGCTCTGAGTTCCCGGT
TCTTGGTCATAAAGCCACAGACCAAAGCAAGCCAGTGGTGAAAGAGAAATGGGGAGTTGGTGTGTTGTTTCTGGCGATTG
CTGCCCTGTGTTATATCCTCGGCCAACTCGGTTTTATCCAGTGGGTCCCCGAATATGCAACCAAAACCTTCAATATGAAT
ATTAGCCAGGCAGGCCAATTGGTCAGTAACTTCTGGATTTCATACATGATAGGGATGTGGATATTCAGCTTTATCCTGCG
CTTCTTTGACCTGCAACGTATCGTAACCGTGCTGGCGGCCATGGCAACACTGGCGATGTATCTGTTTGTCAGCACCGATA
ACCCTGCATACTTGAGTTACTACATTTTGGCGTTAGGTTTTGTTTCCAGTGCCATTTATACCACGCTGATTACACTCGGT
TCGCTGCAAACCAAAGTGTCTTCACCCAAGCTGGTGAACTTCATTCTGACCTGCGGTACCGTAGGGACCATGCTGACCTT
TGTGGTGACGGGTCCAATCGTCGCCAACAACGGTGTACATGCCGCACTGGAAACGGCAAACGGTTTGTATTTGGCGGTAT
TTATCTTGTGTCTGGCATTAGGTTTCTTCACCAAACACCGTAGTCACGGCCACGTGACCCACTGA

Upstream 100 bases:

>100_bases
TGCAATAAAGCAGCAAACACGTGCCGTTAACCATCCTGTGGTGACAAGAATGCTGTAGCGCCAAAGAGGAAGGGTAAATA
CTGACATACAGGCCACACCT

Downstream 100 bases:

>100_bases
TTTATCTGCGTTACCGCCCTGCCGCCGCCAAGGTGGCAGGGTATTGATGATTCACTAATGCCGTAAACATCGAAAATCCT
ACCGTTAACGCCGAAAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNNSNRIRLTWISYLSYALTGALVIVTGIVMGNIAEYFNLPIASMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLVFGF
ILMLIAIAGLMVGHNLMIFSISMFIFGVVSGITMSIGTFLVTHMYEGRQRGSRLLFTDSFFSMAGMIFPIAAAMLLARHI
EWYWVYACIGLLYVGIFVLTLCSEFPVLGHKATDQSKPVVKEKWGVGVLFLAIAALCYILGQLGFIQWVPEYATKTFNMN
ISQAGQLVSNFWISYMIGMWIFSFILRFFDLQRIVTVLAAMATLAMYLFVSTDNPAYLSYYILALGFVSSAIYTTLITLG
SLQTKVSSPKLVNFILTCGTVGTMLTFVVTGPIVANNGVHAALETANGLYLAVFILCLALGFFTKHRSHGHVTH

Sequences:

>Translated_394_residues
MNNSNRIRLTWISYLSYALTGALVIVTGIVMGNIAEYFNLPIASMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLVFGF
ILMLIAIAGLMVGHNLMIFSISMFIFGVVSGITMSIGTFLVTHMYEGRQRGSRLLFTDSFFSMAGMIFPIAAAMLLARHI
EWYWVYACIGLLYVGIFVLTLCSEFPVLGHKATDQSKPVVKEKWGVGVLFLAIAALCYILGQLGFIQWVPEYATKTFNMN
ISQAGQLVSNFWISYMIGMWIFSFILRFFDLQRIVTVLAAMATLAMYLFVSTDNPAYLSYYILALGFVSSAIYTTLITLG
SLQTKVSSPKLVNFILTCGTVGTMLTFVVTGPIVANNGVHAALETANGLYLAVFILCLALGFFTKHRSHGHVTH
>Mature_394_residues
MNNSNRIRLTWISYLSYALTGALVIVTGIVMGNIAEYFNLPIASMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLVFGF
ILMLIAIAGLMVGHNLMIFSISMFIFGVVSGITMSIGTFLVTHMYEGRQRGSRLLFTDSFFSMAGMIFPIAAAMLLARHI
EWYWVYACIGLLYVGIFVLTLCSEFPVLGHKATDQSKPVVKEKWGVGVLFLAIAALCYILGQLGFIQWVPEYATKTFNMN
ISQAGQLVSNFWISYMIGMWIFSFILRFFDLQRIVTVLAAMATLAMYLFVSTDNPAYLSYYILALGFVSSAIYTTLITLG
SLQTKVSSPKLVNFILTCGTVGTMLTFVVTGPIVANNGVHAALETANGLYLAVFILCLALGFFTKHRSHGHVTH

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. TsgA family [H]

Homologues:

Organism=Escherichia coli, GI1789764, Length=393, Percent_Identity=74.8091603053435, Blast_Score=598, Evalue=1e-172,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43654; Mature: 43654

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure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HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA