| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is pckA [H]
Identifier: 22127788
GI number: 22127788
Start: 4373979
End: 4375598
Strand: Reverse
Name: pckA [H]
Synonym: y3918
Alternate gene names: 22127788
Gene position: 4375598-4373979 (Counterclockwise)
Preceding gene: 22127789
Following gene: 22127783
Centisome position: 95.11
GC content: 49.57
Gene sequence:
>1620_bases ATGAGTGTTAAAGGAATTACCCCGCAGGAGCTCGCCGCCTATGGCATCCATAACGTCAGCGAGATTGTTTACAACCCAAG CTATGATTTACTGTTTGAAGAAGAGACTAAACCCACGTTGGAAGGATACGAGCGTGGCACACTGACGACTACCGGCGCAA TAGCGGTAGATACCGGTATTTTTACCGGGCGTTCACCCAAAGATAAATATATTGTCCGCGATGCTATCACTCAGGATACC GTGTGGTGGGCCGATCAGGGCAAAGGTAAAAATGATAATAAGCCTCTGAGCCAAGAGATCTGGAACCATTTGAAAGGTCT GGTGACGGAACAACTCTCTGGCAAACGCCTCTTTGTTGTCGATACATTCTGCGGTGCTAATGCGGATACCCGCCTGCAAG TCCGCTTTATCACGGAAGTCGCTTGGCAGGCACACTTCGTCAAAAATATGTTTATCCGTCCATCAGATGAAGAACTGGCT CGGTTTGAACCTGACTTTATCGTGATGAACGGTGCCAAATGCACTAACCCACAATGGAAAGAGCAGGGCCTGAATTCAGA AAACTTTGTCGCCTTTAATCTGACAGAACGTATGCAGTTGATTGGTGGCACGTGGTATGGCGGCGAAATGAAGAAAGGGA TGTTCTCAATGATGAACTACCTGCTGCCACTGAAAGGCATTGCTTCAATGCATTGTTCAGCTAACGTCGGCGAAAAAGGC GATGTTGCCATCTTCTTCGGTCTGTCGGGTACCGGTAAAACCACTTTATCTACCGATCCAAAACGCAAGTTGATCGGTGA TGATGAACATGGCTGGGATGATGATGGCGTCTTTAACTTCGAGGGGGGGTGCTACGCTAAAACCATCAAGTTATCTGAAG AAGCAGAGCCAGATATTTACCACGCCATTAAACGCGACGCCTTGCTGGAAAACGTGGTGGTGCTAGCAGACGGTACCGTT GATTTTAATGACGGTTCTAAAACTGAAAACACCCGTGTCTCTTATCCGATTTACCACATTGATAACATTGTTAAACCGGT GTCCAAAGCAGGCCATGCGACCAAGGTTATCTTCCTGACTGCCGATGCCTTTGGTGTGCTCCCCCCAGTATCTCGTCTGA CCGCAAACCAGACTCAATATCACTTCCTCTCTGGCTTTACTGCCAAACTGGCAGGGACAGAGCGTGGCGTCACGGAGCCA ACACCAACCTTCTCTGCTTGCTTTGGTGCGGCCTTCCTGTCGCTGCACCCAACGCAGTACGCTGAAGTGCTGGTTAAGCG TATGCAAGCGGTTGGCGCACAAGCCTATCTGGTCAATACCGGTTGGAACGGGACAGGTAAGCGTATTTCCATCAAGGATA CCCGCGCCATTATTGACGCAATCCTAAACGGGGAGATTGATAAGGCAGAAACCTTTACGCTGCCAATCTTTGATCTGGCA GTCCCTATGGCGTTACCCGGTGTGAATCCCGATATCCTCGATCCTCGCGACACCTACGCCGATAAAGCGCAATGGCAAGA GAAAGCCGAAGATTTGGCGAAACGCTTTGCGACTAACTTTGATAAATACACTGATACCCCTGCGGGGGCCGCGTTGGTTA GCGCGGGGCCAAAGATCTAA
Upstream 100 bases:
>100_bases AAAATAGGTCATATATTAAAATATTTGATAGCTATCGCTGTTAATCAGAGATGACTACTTACAATCGCTGGTAGAAAATT GACGATCCAGGAGTTATGAC
Downstream 100 bases:
>100_bases GCCAGTGTTAGCTGTTTTAGTTTAGCGTTACAGGGGGCACTTTCAGAATTGTGCCCCTTTTTTCTATTTATTTATAAAAC CACTGACCTATTGATAAAAC
Product: phosphoenolpyruvate carboxykinase
Products: NA
Alternate protein names: PEP carboxykinase; PEPCK; Phosphoenolpyruvate carboxylase [H]
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MSVKGITPQELAAYGIHNVSEIVYNPSYDLLFEEETKPTLEGYERGTLTTTGAIAVDTGIFTGRSPKDKYIVRDAITQDT VWWADQGKGKNDNKPLSQEIWNHLKGLVTEQLSGKRLFVVDTFCGANADTRLQVRFITEVAWQAHFVKNMFIRPSDEELA RFEPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKG DVAIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDDGVFNFEGGCYAKTIKLSEEAEPDIYHAIKRDALLENVVVLADGTV DFNDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTANQTQYHFLSGFTAKLAGTERGVTEP TPTFSACFGAAFLSLHPTQYAEVLVKRMQAVGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGEIDKAETFTLPIFDLA VPMALPGVNPDILDPRDTYADKAQWQEKAEDLAKRFATNFDKYTDTPAGAALVSAGPKI
Sequences:
>Translated_539_residues MSVKGITPQELAAYGIHNVSEIVYNPSYDLLFEEETKPTLEGYERGTLTTTGAIAVDTGIFTGRSPKDKYIVRDAITQDT VWWADQGKGKNDNKPLSQEIWNHLKGLVTEQLSGKRLFVVDTFCGANADTRLQVRFITEVAWQAHFVKNMFIRPSDEELA RFEPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKG DVAIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDDGVFNFEGGCYAKTIKLSEEAEPDIYHAIKRDALLENVVVLADGTV DFNDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTANQTQYHFLSGFTAKLAGTERGVTEP TPTFSACFGAAFLSLHPTQYAEVLVKRMQAVGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGEIDKAETFTLPIFDLA VPMALPGVNPDILDPRDTYADKAQWQEKAEDLAKRFATNFDKYTDTPAGAALVSAGPKI >Mature_538_residues SVKGITPQELAAYGIHNVSEIVYNPSYDLLFEEETKPTLEGYERGTLTTTGAIAVDTGIFTGRSPKDKYIVRDAITQDTV WWADQGKGKNDNKPLSQEIWNHLKGLVTEQLSGKRLFVVDTFCGANADTRLQVRFITEVAWQAHFVKNMFIRPSDEELAR FEPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGD VAIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDDGVFNFEGGCYAKTIKLSEEAEPDIYHAIKRDALLENVVVLADGTVD FNDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTANQTQYHFLSGFTAKLAGTERGVTEPT PTFSACFGAAFLSLHPTQYAEVLVKRMQAVGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGEIDKAETFTLPIFDLAV PMALPGVNPDILDPRDTYADKAQWQEKAEDLAKRFATNFDKYTDTPAGAALVSAGPKI
Specific function: Rate-limiting gluconeogenic enzyme. [C]
COG id: COG1866
COG function: function code C; Phosphoenolpyruvate carboxykinase (ATP)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoenolpyruvate carboxykinase [ATP] family [H]
Homologues:
Organism=Escherichia coli, GI1789807, Length=535, Percent_Identity=87.8504672897196, Blast_Score=990, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6322950, Length=541, Percent_Identity=44.177449168207, Blast_Score=438, Evalue=1e-123,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001272 - InterPro: IPR013035 - InterPro: IPR008210 - InterPro: IPR015994 [H]
Pfam domain/function: PF01293 PEPCK_ATP [H]
EC number: =4.1.1.49 [H]
Molecular weight: Translated: 59349; Mature: 59218
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS00532 PEPCK_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKGITPQELAAYGIHNVSEIVYNPSYDLLFEEETKPTLEGYERGTLTTTGAIAVDTGI CCCCCCCHHHHHHHCCCHHHHHEECCCCCEEEECCCCCCHHCCCCCCEEECCEEEEECCE FTGRSPKDKYIVRDAITQDTVWWADQGKGKNDNKPLSQEIWNHLKGLVTEQLSGKRLFVV ECCCCCCCCEEEHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE DTFCGANADTRLQVRFITEVAWQAHFVKNMFIRPSDEELARFEPDFIVMNGAKCTNPQWK EECCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCHH EQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKG HCCCCCCCEEEEEHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DVAIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDDGVFNFEGGCYAKTIKLSEEAEPDIY CEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHH HAIKRDALLENVVVLADGTVDFNDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLT HHHHHHHHHCCEEEEECCEEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEEEE ADAFGVLPPVSRLTANQTQYHFLSGFTAKLAGTERGVTEPTPTFSACFGAAFLSLHPTQY CCCCCCCCCHHHHHCCCCHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHH AEVLVKRMQAVGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGEIDKAETFTLPIFDLA HHHHHHHHHHCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCEEEEEHHHHH VPMALPGVNPDILDPRDTYADKAQWQEKAEDLAKRFATNFDKYTDTPAGAALVSAGPKI HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHCCCCCCC >Mature Secondary Structure SVKGITPQELAAYGIHNVSEIVYNPSYDLLFEEETKPTLEGYERGTLTTTGAIAVDTGI CCCCCCHHHHHHHCCCHHHHHEECCCCCEEEECCCCCCHHCCCCCCEEECCEEEEECCE FTGRSPKDKYIVRDAITQDTVWWADQGKGKNDNKPLSQEIWNHLKGLVTEQLSGKRLFVV ECCCCCCCCEEEHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE DTFCGANADTRLQVRFITEVAWQAHFVKNMFIRPSDEELARFEPDFIVMNGAKCTNPQWK EECCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCHH EQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKG HCCCCCCCEEEEEHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DVAIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDDGVFNFEGGCYAKTIKLSEEAEPDIY CEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHH HAIKRDALLENVVVLADGTVDFNDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLT HHHHHHHHHCCEEEEECCEEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEEEE ADAFGVLPPVSRLTANQTQYHFLSGFTAKLAGTERGVTEPTPTFSACFGAAFLSLHPTQY CCCCCCCCCHHHHHCCCCHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHH AEVLVKRMQAVGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGEIDKAETFTLPIFDLA HHHHHHHHHHCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCEEEEEHHHHH VPMALPGVNPDILDPRDTYADKAQWQEKAEDLAKRFATNFDKYTDTPAGAALVSAGPKI HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA