Click here to switch to the map view.

The map label for this gene is lsrF [H]

Identifier: 22127644

GI number: 22127644

Start: 4194191

End: 4195066

Strand: Direct

Name: lsrF [H]

Synonym: y3773

Alternate gene names: 22127644

Gene position: 4194191-4195066 (Clockwise)

Preceding gene: 22127643

Following gene: 22127645

Centisome position: 91.16

GC content: 52.17

Gene sequence:

>876_bases
ATGGCTGATTTAGACGATATCAAAGACGGTAAAGATTTCGGTATTGGCATCCCACAGCAGAACCCCGCGTTTACGCTGAA
AGGTTCAGGTTCACTCGATTGGGGAATGCAATCCCGCCTGGCGCGGATTTTTAACCCGAAAACCAATCGCACGGTGATGC
TGGCCTTTGACCATGGCTATTTTCAGGGGCCGACCACCGGGCTGGAGCGAATTGATATCAATATCGCCCCGCTGTTTGAG
TATGCCGATGTCTTAATGTGTACCCGCGGTATTTTGCGTAGCGTCGTTCCAGCGGCGGCCAACCGCCCGGTGGTACTGCG
CGCCTCCGGTGCTAACTCAATTCTGACCTATTTATCCAATGAAGCGGTCGCCGTAGCGATGGAAGATGCTGTACGGCTCA
ATGCCTGCGCGGTCGCCGCACAGGTGTATATCGGTACGGAACATGAACATCAATCGATTAAAAATATTATCCAATTGATC
GATCAAGGGATGCGCTATGGCATGCCAACCATGGCGGTGACGGGCGTGGGTAAAGATATGGTGCGAGATCAACGTTACTT
CTCGCTAGCCAGCCGAATCGCGGCAGAAATGGGCGCGCAGGTGATCAAAACGTATTATGTCGATAGCGGGTTTGAGCGCA
TTGCCGCCGGTTGCCCGGTACCGATTGTGATTGCAGGTGGGAAAAAGTTGCCGGAACGTGATGCGCTGGAAATGTGCTAT
CAAGCGATTGATCAAGGGGCATCAGGCGTGGATATGGGGCGCAATATTTTTCAGTCAGATGCGCCGATCGCCATGCTGAA
AGCGGTACATGCCATTGTGCATAAAAATGAGAATGCCGCTGCGGCTTACCAACTGTTCCTCCATGAACAAAATTGA

Upstream 100 bases:

>100_bases
CGCGTCATCTTCACCAAAGAAAATATCAGTAAATACGACTTTTAATCTTAGCGGCCCGCCCCCGTGGTGGGTCTGAACAG
AACGAATGGAGTAATTAAAG

Downstream 100 bases:

>100_bases
GTAGAACTGGCGGCCATCCGTGATTTTACCTACCGCTAATGGCCCCATGACAAGGAGAAAAGTATGCACGTTACTCTCGT
CGAAATTAATGTAAAAGAGG

Product: aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MADLDDIKDGKDFGIGIPQQNPAFTLKGSGSLDWGMQSRLARIFNPKTNRTVMLAFDHGYFQGPTTGLERIDINIAPLFE
YADVLMCTRGILRSVVPAAANRPVVLRASGANSILTYLSNEAVAVAMEDAVRLNACAVAAQVYIGTEHEHQSIKNIIQLI
DQGMRYGMPTMAVTGVGKDMVRDQRYFSLASRIAAEMGAQVIKTYYVDSGFERIAAGCPVPIVIAGGKKLPERDALEMCY
QAIDQGASGVDMGRNIFQSDAPIAMLKAVHAIVHKNENAAAAYQLFLHEQN

Sequences:

>Translated_291_residues
MADLDDIKDGKDFGIGIPQQNPAFTLKGSGSLDWGMQSRLARIFNPKTNRTVMLAFDHGYFQGPTTGLERIDINIAPLFE
YADVLMCTRGILRSVVPAAANRPVVLRASGANSILTYLSNEAVAVAMEDAVRLNACAVAAQVYIGTEHEHQSIKNIIQLI
DQGMRYGMPTMAVTGVGKDMVRDQRYFSLASRIAAEMGAQVIKTYYVDSGFERIAAGCPVPIVIAGGKKLPERDALEMCY
QAIDQGASGVDMGRNIFQSDAPIAMLKAVHAIVHKNENAAAAYQLFLHEQN
>Mature_290_residues
ADLDDIKDGKDFGIGIPQQNPAFTLKGSGSLDWGMQSRLARIFNPKTNRTVMLAFDHGYFQGPTTGLERIDINIAPLFEY
ADVLMCTRGILRSVVPAAANRPVVLRASGANSILTYLSNEAVAVAMEDAVRLNACAVAAQVYIGTEHEHQSIKNIIQLID
QGMRYGMPTMAVTGVGKDMVRDQRYFSLASRIAAEMGAQVIKTYYVDSGFERIAAGCPVPIVIAGGKKLPERDALEMCYQ
AIDQGASGVDMGRNIFQSDAPIAMLKAVHAIVHKNENAAAAYQLFLHEQN

Specific function: Could be involved in the degradation of phospho-AI-2 [H]

COG id: COG1830

COG function: function code G; DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family [H]

Homologues:

Organism=Escherichia coli, GI1787796, Length=291, Percent_Identity=83.5051546391753, Blast_Score=514, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: 4.2.1.- [C]

Molecular weight: Translated: 31612; Mature: 31481

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLDDIKDGKDFGIGIPQQNPAFTLKGSGSLDWGMQSRLARIFNPKTNRTVMLAFDHGY
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCC
FQGPTTGLERIDINIAPLFEYADVLMCTRGILRSVVPAAANRPVVLRASGANSILTYLSN
CCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCC
EAVAVAMEDAVRLNACAVAAQVYIGTEHEHQSIKNIIQLIDQGMRYGMPTMAVTGVGKDM
CEEEEEEHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHH
VRDQRYFSLASRIAAEMGAQVIKTYYVDSGFERIAAGCPVPIVIAGGKKLPERDALEMCY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
QAIDQGASGVDMGRNIFQSDAPIAMLKAVHAIVHKNENAAAAYQLFLHEQN
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEEEEEECCC
>Mature Secondary Structure 
ADLDDIKDGKDFGIGIPQQNPAFTLKGSGSLDWGMQSRLARIFNPKTNRTVMLAFDHGY
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCC
FQGPTTGLERIDINIAPLFEYADVLMCTRGILRSVVPAAANRPVVLRASGANSILTYLSN
CCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCC
EAVAVAMEDAVRLNACAVAAQVYIGTEHEHQSIKNIIQLIDQGMRYGMPTMAVTGVGKDM
CEEEEEEHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHH
VRDQRYFSLASRIAAEMGAQVIKTYYVDSGFERIAAGCPVPIVIAGGKKLPERDALEMCY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
QAIDQGASGVDMGRNIFQSDAPIAMLKAVHAIVHKNENAAAAYQLFLHEQN
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA