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The map label for this gene is yfiB [H]

Identifier: 22127605

GI number: 22127605

Start: 4148178

End: 4148684

Strand: Direct

Name: yfiB [H]

Synonym: y3731

Alternate gene names: 22127605

Gene position: 4148178-4148684 (Clockwise)

Preceding gene: 22127604

Following gene: 161484739

Centisome position: 90.16

GC content: 47.14

Gene sequence:

>507_bases
ATGCAGAAAATGCAAAACAAGCGTTTAATACAACGTATTTGGGTCAGTTTCCTGGCAATGGGTTTGATGCTATTAGTGGG
GTGTCAGGCTAAACCACAAGGGCTAACACCTGATCAAATCGCCGCATTGCAAGAGCAGGGGTTTAAATTAACCGATAATG
GCTGGGAATTTGGCCTGGCAAATAAAGTGCTATTCGACAGTGATGTGAAAAAATTAAATTCTGAGGGTATGCAAACCGTA
CAAAAGATTGGCCGGATATTGTCAGATGTGGGGATTAAGCATATGCGGGTTGATGGTCATACCGACTCCGTCGGGAAGGA
TGACTATAATCAACAATTATCCTACCAGCGCGCCTTAGCCGTAGCCGATACTCTCGCTACCGTCGGTATTCCAAAGAGTA
ATATTGATGTTCGTGGCCGTGGCAAGTTAGAGCCCGTCGCGGATAACCGCACCAGTAAAGGCCGAGCCGAAAACCGCCGC
GTCGCCATTATTATCACCGCGTCCTAA

Upstream 100 bases:

>100_bases
ATGAAGCGATGTATCAGGCGAAGAAAAACTTCCGGTCTGGCAAGCGTATTTTTGCCTATCAGCCGAATACGACTAACACA
GAAAGTTTAGGATAGGTGAC

Downstream 100 bases:

>100_bases
CGTCCTTTATTTACCGGTTTGCGGCTGTAAACCGGTTTCTGCCTTTATTCTGCTCAGATATAGACCCAGAGCCATTGGCA
ATGCAGCTTAGCTGCCAGGA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MQKMQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTV
QKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRR
VAIIITAS

Sequences:

>Translated_168_residues
MQKMQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTV
QKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRR
VAIIITAS
>Mature_168_residues
MQKMQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTV
QKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRR
VAIIITAS

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=154, Percent_Identity=46.1038961038961, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI48994946, Length=126, Percent_Identity=35.7142857142857, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787191, Length=96, Percent_Identity=38.5416666666667, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18565; Mature: 18565

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKMQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCCEECCC
NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
VADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAIIITAS
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MQKMQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCCEECCC
NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
VADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAIIITAS
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]