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The map label for this gene is fliR [H]

Identifier: 22127346

GI number: 22127346

Start: 3852435

End: 3853214

Strand: Direct

Name: fliR [H]

Synonym: y3471

Alternate gene names: 22127346

Gene position: 3852435-3853214 (Clockwise)

Preceding gene: 22127345

Following gene: 22127347

Centisome position: 83.73

GC content: 47.56

Gene sequence:

>780_bases
ATGCCGATGGGAATCGATATTCATGCCATGACGGCTCCGCTATTCGCACTCTGGCTACCTTTTGTCAGGATTTTGTCGTT
TTTGCATTTTTGTCCGGTTATTCGGCATAAAGCCTTTACCCGCAAAGCCAAGATTGGCACCGCGCTGTTACTGGCCATTT
TGATAACCCCAATGATCAGCCAACCGGTGGTATCCGGGGAGTTGCTCTCGATAGAAAACCTCTTATTGGCCGGTGAACAA
ATTCTGTGGGGCTGGTTATTTGGCTCCATGTTGCATTTGGTACTAGCCGCATTAGAGGCCGCGGGTCAGATTCTATCGAT
GAATATGGGCCTGGGTATGGCAATGATGAATGACCCCACCAGCGGAGCATCGACGGCGGTTATCTCACAAATAATCTTTA
CTTTCAGTGTGTTGATTTTTTTTACCCTTAATGGCCACTTACTGTTTGTCACCATTTTGTTGAAAAGTTTCAGTAGCTGG
CCTATCGGCGAAGCCATCAATGATTTTTCACTACGTTCATTGGCACTGAGCCTTGGCTGGATCCTTTCATCGGCCACGCT
GTTAGCACTGCCTACCACTTTTATCATGCTGATCGTGCAAGGGTCTTTCGGGTTACTGAACCGTATCTCCCCCACGTTAA
ACCTGTTTTCACTCGGTTTCCCTATCGGCATGTTGTTTGGCCTGCTGTGCCTGCTGCTGTTAGCGATCAATATCCCTGAT
CATTATCTTCATCTGACCAATGAGATCCTGACACAGTTTGAACGGATGAAGGTGCACTGA

Upstream 100 bases:

>100_bases
GACAATGTTGGTTCTCATCTTTGCGGGTAAATGGATGATGATCAAACTGAGTGATTTTACCGTCAGTATTTTCCAGCAAG
CCGCACAGTTGGTTGGGTAA

Downstream 100 bases:

>100_bases
TGTCGAACAGCAGTGGTGAGAAGAGTGAAAAACCCACAGCGGGGAAGCTGTCGAAAGCCAGAAAAAAAGGCGATATCCCC
CGTTCTAAAGATGTCACCAT

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MPMGIDIHAMTAPLFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSGELLSIENLLLAGEQ
ILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQIIFTFSVLIFFTLNGHLLFVTILLKSFSSW
PIGEAINDFSLRSLALSLGWILSSATLLALPTTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPD
HYLHLTNEILTQFERMKVH

Sequences:

>Translated_259_residues
MPMGIDIHAMTAPLFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSGELLSIENLLLAGEQ
ILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQIIFTFSVLIFFTLNGHLLFVTILLKSFSSW
PIGEAINDFSLRSLALSLGWILSSATLLALPTTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPD
HYLHLTNEILTQFERMKVH
>Mature_258_residues
PMGIDIHAMTAPLFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSGELLSIENLLLAGEQI
LWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQIIFTFSVLIFFTLNGHLLFVTILLKSFSSWP
IGEAINDFSLRSLALSLGWILSSATLLALPTTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDH
YLHLTNEILTQFERMKVH

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=231, Percent_Identity=31.6017316017316, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28433; Mature: 28302

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMGIDIHAMTAPLFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMIS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPVVSGELLSIENLLLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
SGASTAVISQIIFTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFSLRSLALSLGW
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ILSSATLLALPTTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPD
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HYLHLTNEILTQFERMKVH
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PMGIDIHAMTAPLFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMIS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPVVSGELLSIENLLLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
SGASTAVISQIIFTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFSLRSLALSLGW
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ILSSATLLALPTTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPD
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HYLHLTNEILTQFERMKVH
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]