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The map label for this gene is yvoA [H]

Identifier: 21910379

GI number: 21910379

Start: 896911

End: 897609

Strand: Reverse

Name: yvoA [H]

Synonym: SpyM3_0843

Alternate gene names: 21910379

Gene position: 897609-896911 (Counterclockwise)

Preceding gene: 21910380

Following gene: 21910378

Centisome position: 47.23

GC content: 38.91

Gene sequence:

>699_bases
ATGTTACCAGCTTATATAAAAATTCATGATGCAATTAAAAAAGACATTGATCTGGGCATCTGGCCAATTGGTAGTCGCTT
ACCAAGTGAACGACATTTAGCGGAACATTTCACCGTTAGTCGAATGACTCTACGGCAGGCTATTACATTACTAGTAGAAG
AAGGGATTCTTGAAAGGCGGATAGGAAGTGGTACTTATGTTGCCAGTCATCGTGTTCAAGAAAAAATGCGAGGAACAACA
AGTTTCACAGAAATTATACGCTCCCAAGGACGACAACCCTCCTCTAAATTATTATCCTATCAAAAGCAATTAGCTAGTGA
TACCGAAGTTAAAGAATTGAACTTAGACAAAACAGACTTGGTCATTCGAATGGAACGTATCCGCTATGCAGACAGTGTCC
CTTTGGTGTACGAAATTGCTTCAATCCCAGAAAAATTTATAAAAACGGTTAAACGAGCTGATATTACAGAACACTTTTTT
CACTCATTGATAGCAAATGGTTACGAGATTGGTAAAAGTAAACAGACAATCTACGCTAAGCTAGCAAGTGAGCGTGTAGC
CTCCTACTTGGAAGTTGCTAAAGGACATGCCATTTTGGCTCTAACTCAGGTGTCTTACTTTACAGACGGCAAACCTTTTG
AGTATGTCCGCAGTCAGTATATCGGTGACCGTTTTGAATTTTACTTAGAAAATAATTAG

Upstream 100 bases:

>100_bases
GGTAATATCATTAATTGATGCCAAATACCTCAATATTTACAATTCAATTTTCATCAAAAATATGATAAAATAGATGAATA
ACCGACTTGAGGAGTGTGGC

Downstream 100 bases:

>100_bases
TAAAGAAGTCATTTATGACTTCCTTTTTTACACGAACAGCATAAGGCAATTAATTTGCTACTGTTAAAAACAATCATAGT
ATGATAAAATGAACATTATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERRIGSGTYVASHRVQEKMRGTT
SFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFF
HSLIANGYEIGKSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLENN

Sequences:

>Translated_232_residues
MLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERRIGSGTYVASHRVQEKMRGTT
SFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFF
HSLIANGYEIGKSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLENN
>Mature_232_residues
MLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERRIGSGTYVASHRVQEKMRGTT
SFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFF
HSLIANGYEIGKSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLENN

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=30.7017543859649, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790118, Length=212, Percent_Identity=28.3018867924528, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082252, Length=212, Percent_Identity=25.9433962264151, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=23.2456140350877, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790540, Length=217, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26618; Mature: 26618

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERR
CCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGSGTYVASHRVQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCCCCHHHH
VIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFFHSLIANGYEIGKSKQTIYAK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHCCCCHHHHHHH
LASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLENN
HHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERR
CCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGSGTYVASHRVQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCCCCHHHH
VIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFFHSLIANGYEIGKSKQTIYAK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHCCCCHHHHHHH
LASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLENN
HHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]