Definition | Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome. |
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Accession | NC_004061 |
Length | 641,454 |
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The map label for this gene is ytfN [C]
Identifier: 21672372
GI number: 21672372
Start: 88296
End: 91202
Strand: Direct
Name: ytfN [C]
Synonym: BUsg080
Alternate gene names: 21672372
Gene position: 88296-91202 (Clockwise)
Preceding gene: 21672369
Following gene: 21672374
Centisome position: 13.76
GC content: 17.96
Gene sequence:
>2907_bases ATGAGTTTGTATCAGAGATATTTATCTAAATCTTTGATTTTTATTTTTAGTTTATTTTTTTTAATATTATTCTTTTTAGA AAGTAGTATAGGATTCAAATATTTTTTTAATTTTACTAATTACTTTTTCATAGGATTGAAAACAGAAGAAATATCAGGAA ATTGGCGTGATTTTAAATTAAAGAAAATCAATTTTAATATTTTCGGAACATCTATTAAAGCTGAAAGTGTTCATATTATA ACAGATCCGATATCTTTATTTAAAGTTTCTACTATTTTGAAAAAAATAAAAACAAAGAATTTGGTTATTTCATTCAATAA AAAAATTAAAAAAGTAGCTTTAAAAAATAATTTTCTAAAAGAAAAAAAAATAAAAAATACTATTTTTTTTAAACATTCAT TAATTTTAAGAAAAATATATTCTGATAAAATTTTATTAAAAACACAAAAAAAAAATATATTTTTATTTGGTGTATTTAGT GGATTACAATTAAGTAATGATACTTGTACTTTCTTGCCTACTAAAATTAATTCAATTTATATTGATTCATCCATGCGTAA TGTAAAAAACATTGATAATAAAAAAAGCAATTTTTTTATTAAGAAAGATATTTTTTACAGAAACAAAATAGATAATGCTT TATCTTTTTTTTCAATTTTTAAAAATTTTTTTATTCCTATAAATATAAATTTGATAAATTTAAAATGTAATCAACTAAAA TTTTTTAATAGAACGTTTTTAGATATCTATAAAATCAAAATGAGTGCTCAATTAAAAAAAAATATTTTAAAAATAAAAAA AATTCAAATATATTCAAAATATTTTAAAACAAAGTCTAAAGGTAAAATTTTTTTTAGAAGTGACTTTTCTATTTTTTTCA TAGTAAAAAATGAAATGTCAATAAATATTATTAATAATAAAGCTATGAATTTGTTATTTAAAGATACTATTGATCATAAA CTCAATTTCAAATCAAATAATTTAATCAAATTTAATATTCATGGAGAAATATCATTAGATGATTTAAATTATCCTATTCA TATAAATTTACATCTTAATCGTCTTTTTTTGCCTATAAGTAAAAATTTAATATTAAGTTCAAAAAATTTTAATTTTTCTT TAAAAGGAAAAATTAATAATTATTTTTTATCATTAAAAAATATTATTAATATTTCAGGTATGCCATCTTTTTTTATCAGT ATTTCAGCTATTGGTAACATTCAAAATGTTGTTATAAAAAAAATTCATTTTTTTCCATTTTTTAAAGAAATTAAAACTAA AAAATTTATAAAAATAAAAAAAGAAATAGATTACAATAAGTATATTACTCAGTTAGCAGGAAAAATGCGTATATTATCCG ATTTCAATAAACAATCTAGTAATATTTTTCTTCCTTATTTTCATGTTTACGGAGATTTCATGAGGAAAAAAATATCTGTA TTAGGTTCTTTATATTATCGGAAATTAAATGGTATAACAATTCCTAGAATAAATTTTTTATTAGGAAAAAATAAAGGTCA TATATCTGGATCTATATCCAAAAAAGTCAACCTTCGTTCGTCAATTTATGCAAATAATTTAAACTATTTTTCACCAAATT TAAAAGGTATAATAAAAGCTACTTTAAACATATATAGTTTTTGTTCTCTTCCTTCTTTTTCTAGTGTTATTCTAGGTCAA AAAATTAATTGGAAAAATATTTTATATTTCAATAATATTAAAATCACTACTAATGGAAATTTAAAAAAATCTTTTCCAAA TAAATTTTTTGCTGATTTTAAAAATATACGTTTTTCAAAATTTCATATTAATTCTTTGCATATTAAATCTGATTGGAATA ATATAAATCAAAAATTTTCTTTATCGTTGAAAGATAAAAAATTATCTATAACATTCATTTTAAATGGTCATCTAAATAGA AAAGTAGGTATTTGGAAAGGTGTTTTAAAAAAAATAGATGTTAAAACTTCCTGGGGACAATGGATTTCAAGAAATAATCC TTTAATATTCTATCATATTAAAAATAGCATTAATTTTAAGAATATAAAGAAAATAAAAAATAAAAATGCTTTTTATTCTG CTATTAATAATATTCAAACTTCATTGTTTAAATTAATTCGTCAATCACCTGTAAAATTTCAAACTGATTTATTCTTTAAT ACACAATTTCAGTGGAAATTAAGAGAAAATATTACTAATTTAAAACTTTTTTTAAAGGGTAGTAACATAAATTTAGAAAA AAAAATAAAAGAAAAAATAATGTTTGAAAAAATAAGTGCTGTAAATTTATATATTAATTTTAAAAAAAATAATTTTATAA CGAAATGGATAATAAAAAAATCAAAAAATTCATTAAAAGTAAATAAAATATCTGGTTTTTTAAACATCTATGATTTTTTT CATGAGAAAAAAATAGAAGGAAAGGTTTTTTTATCTGATTTTTCTTGTTCTTTTTTGAATTTTTTTGAAAATTTTTTTAC AAAAATTCAAGGAAAATTTTCAGGAAATATAAATTTTTTAGGAACTATATATCAGCCTCAAATATCGGCTGATATTAATT TTCAAGATTTTTATATAAAAAGTGATAAGATATTTAAATATATGCTTTTATTTTTTTGTTCTTTTCCAAATAAAATAGAA AACATTAAAATTAATCAAGAAATAATAATGAAAAAGGGAAATGCATTATTCAAATTAAATTCTGTTGTTAAAAACAATAT ATCTCATATTAAATGGAATATTTTATTTCATAGCAATAAATTAGCAATTGTACTTTTTCCTAAAATAAAGTTGAATTTTT CTTCTCAACTAAATTTGTATTATTTTTTATCAAAATATGACTTAATTGGATATTTAAAATTTTCTTTTTTTTCATTTAAA ATTAACGAAAAAAACTTTTTATTTTAG
Upstream 100 bases:
>100_bases GAACTTAATTTGTTTTGAATAAACGCGTAAATATATTTTTTAATTTTGATAAGATATTTTATAAAAATATTAATATTAAT ATTAAATTAGGATTGTTTAT
Downstream 100 bases:
>100_bases AGATGTGTTTTTCTTAGCACGATCATATGAATTTTTAATTTCTAACTTTGCTTCGTGATGATCACCCCATCCTATGATTT CTACCCATTTTTCTTTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 968; Mature: 967
Protein sequence:
>968_residues MSLYQRYLSKSLIFIFSLFFLILFFLESSIGFKYFFNFTNYFFIGLKTEEISGNWRDFKLKKINFNIFGTSIKAESVHII TDPISLFKVSTILKKIKTKNLVISFNKKIKKVALKNNFLKEKKIKNTIFFKHSLILRKIYSDKILLKTQKKNIFLFGVFS GLQLSNDTCTFLPTKINSIYIDSSMRNVKNIDNKKSNFFIKKDIFYRNKIDNALSFFSIFKNFFIPININLINLKCNQLK FFNRTFLDIYKIKMSAQLKKNILKIKKIQIYSKYFKTKSKGKIFFRSDFSIFFIVKNEMSINIINNKAMNLLFKDTIDHK LNFKSNNLIKFNIHGEISLDDLNYPIHINLHLNRLFLPISKNLILSSKNFNFSLKGKINNYFLSLKNIINISGMPSFFIS ISAIGNIQNVVIKKIHFFPFFKEIKTKKFIKIKKEIDYNKYITQLAGKMRILSDFNKQSSNIFLPYFHVYGDFMRKKISV LGSLYYRKLNGITIPRINFLLGKNKGHISGSISKKVNLRSSIYANNLNYFSPNLKGIIKATLNIYSFCSLPSFSSVILGQ KINWKNILYFNNIKITTNGNLKKSFPNKFFADFKNIRFSKFHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNR KVGIWKGVLKKIDVKTSWGQWISRNNPLIFYHIKNSINFKNIKKIKNKNAFYSAINNIQTSLFKLIRQSPVKFQTDLFFN TQFQWKLRENITNLKLFLKGSNINLEKKIKEKIMFEKISAVNLYINFKKNNFITKWIIKKSKNSLKVNKISGFLNIYDFF HEKKIEGKVFLSDFSCSFLNFFENFFTKIQGKFSGNINFLGTIYQPQISADINFQDFYIKSDKIFKYMLLFFCSFPNKIE NIKINQEIIMKKGNALFKLNSVVKNNISHIKWNILFHSNKLAIVLFPKIKLNFSSQLNLYYFLSKYDLIGYLKFSFFSFK INEKNFLF
Sequences:
>Translated_968_residues MSLYQRYLSKSLIFIFSLFFLILFFLESSIGFKYFFNFTNYFFIGLKTEEISGNWRDFKLKKINFNIFGTSIKAESVHII TDPISLFKVSTILKKIKTKNLVISFNKKIKKVALKNNFLKEKKIKNTIFFKHSLILRKIYSDKILLKTQKKNIFLFGVFS GLQLSNDTCTFLPTKINSIYIDSSMRNVKNIDNKKSNFFIKKDIFYRNKIDNALSFFSIFKNFFIPININLINLKCNQLK FFNRTFLDIYKIKMSAQLKKNILKIKKIQIYSKYFKTKSKGKIFFRSDFSIFFIVKNEMSINIINNKAMNLLFKDTIDHK LNFKSNNLIKFNIHGEISLDDLNYPIHINLHLNRLFLPISKNLILSSKNFNFSLKGKINNYFLSLKNIINISGMPSFFIS ISAIGNIQNVVIKKIHFFPFFKEIKTKKFIKIKKEIDYNKYITQLAGKMRILSDFNKQSSNIFLPYFHVYGDFMRKKISV LGSLYYRKLNGITIPRINFLLGKNKGHISGSISKKVNLRSSIYANNLNYFSPNLKGIIKATLNIYSFCSLPSFSSVILGQ KINWKNILYFNNIKITTNGNLKKSFPNKFFADFKNIRFSKFHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNR KVGIWKGVLKKIDVKTSWGQWISRNNPLIFYHIKNSINFKNIKKIKNKNAFYSAINNIQTSLFKLIRQSPVKFQTDLFFN TQFQWKLRENITNLKLFLKGSNINLEKKIKEKIMFEKISAVNLYINFKKNNFITKWIIKKSKNSLKVNKISGFLNIYDFF HEKKIEGKVFLSDFSCSFLNFFENFFTKIQGKFSGNINFLGTIYQPQISADINFQDFYIKSDKIFKYMLLFFCSFPNKIE NIKINQEIIMKKGNALFKLNSVVKNNISHIKWNILFHSNKLAIVLFPKIKLNFSSQLNLYYFLSKYDLIGYLKFSFFSFK INEKNFLF >Mature_967_residues SLYQRYLSKSLIFIFSLFFLILFFLESSIGFKYFFNFTNYFFIGLKTEEISGNWRDFKLKKINFNIFGTSIKAESVHIIT DPISLFKVSTILKKIKTKNLVISFNKKIKKVALKNNFLKEKKIKNTIFFKHSLILRKIYSDKILLKTQKKNIFLFGVFSG LQLSNDTCTFLPTKINSIYIDSSMRNVKNIDNKKSNFFIKKDIFYRNKIDNALSFFSIFKNFFIPININLINLKCNQLKF FNRTFLDIYKIKMSAQLKKNILKIKKIQIYSKYFKTKSKGKIFFRSDFSIFFIVKNEMSINIINNKAMNLLFKDTIDHKL NFKSNNLIKFNIHGEISLDDLNYPIHINLHLNRLFLPISKNLILSSKNFNFSLKGKINNYFLSLKNIINISGMPSFFISI SAIGNIQNVVIKKIHFFPFFKEIKTKKFIKIKKEIDYNKYITQLAGKMRILSDFNKQSSNIFLPYFHVYGDFMRKKISVL GSLYYRKLNGITIPRINFLLGKNKGHISGSISKKVNLRSSIYANNLNYFSPNLKGIIKATLNIYSFCSLPSFSSVILGQK INWKNILYFNNIKITTNGNLKKSFPNKFFADFKNIRFSKFHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNRK VGIWKGVLKKIDVKTSWGQWISRNNPLIFYHIKNSINFKNIKKIKNKNAFYSAINNIQTSLFKLIRQSPVKFQTDLFFNT QFQWKLRENITNLKLFLKGSNINLEKKIKEKIMFEKISAVNLYINFKKNNFITKWIIKKSKNSLKVNKISGFLNIYDFFH EKKIEGKVFLSDFSCSFLNFFENFFTKIQGKFSGNINFLGTIYQPQISADINFQDFYIKSDKIFKYMLLFFCSFPNKIEN IKINQEIIMKKGNALFKLNSVVKNNISHIKWNILFHSNKLAIVLFPKIKLNFSSQLNLYYFLSKYDLIGYLKFSFFSFKI NEKNFLF
Specific function: Unknown
COG id: COG2911
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ytfN
Homologues:
Organism=Escherichia coli, GI1790667, Length=1015, Percent_Identity=17.3399014778325, Blast_Score=172, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y080_BUCAP (Q8KA32)
Other databases:
- EMBL: AE013218 - RefSeq: NP_660439.1 - EnsemblBacteria: EBBUCT00000000384 - GeneID: 1005897 - GenomeReviews: AE013218_GR - KEGG: bas:BUsg080 - GeneTree: EBGT00050000007714 - HOGENOM: HBG366229 - OMA: ISGNWRD - ProtClustDB: CLSK315211 - BioCyc: BAPH198804:BUSG080-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 114236; Mature: 114104
Theoretical pI: Translated: 10.90; Mature: 10.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xb80008c)-;
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLYQRYLSKSLIFIFSLFFLILFFLESSIGFKYFFNFTNYFFIGLKTEEISGNWRDFKL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEHHCCCCCCEEEE KKINFNIFGTSIKAESVHIITDPISLFKVSTILKKIKTKNLVISFNKKIKKVALKNNFLK EEEEEEEEEEEEEECEEEEEECCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCHH EKKIKNTIFFKHSLILRKIYSDKILLKTQKKNIFLFGVFSGLQLSNDTCTFLPTKINSIY HHHHHHEEEEHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCEECCCEEEEEEEECCEEE IDSSMRNVKNIDNKKSNFFIKKDIFYRNKIDNALSFFSIFKNFFIPININLINLKCNQLK EECHHHHHHCCCCCCCCEEEEECEEEHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEEE FFNRTFLDIYKIKMSAQLKKNILKIKKIQIYSKYFKTKSKGKIFFRSDFSIFFIVKNEMS ECCHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCEE INIINNKAMNLLFKDTIDHKLNFKSNNLIKFNIHGEISLDDLNYPIHINLHLNRLFLPIS EEEECCCCEEEEEECCCCCEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEC KNLILSSKNFNFSLKGKINNYFLSLKNIINISGMPSFFISISAIGNIQNVVIKKIHFFPF CCEEEECCCCCEEEEECCCEEEEEEHHHEECCCCCEEEEEEEECCCHHHHHHHHHHHCHH FKEIKTKKFIKIKKEIDYNKYITQLAGKMRILSDFNKQSSNIFLPYFHVYGDFMRKKISV HHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH LGSLYYRKLNGITIPRINFLLGKNKGHISGSISKKVNLRSSIYANNLNYFSPNLKGIIKA HHHHHHHHHCCEEECEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHHHHHHH TLNIYSFCSLPSFSSVILGQKINWKNILYFNNIKITTNGNLKKSFPNKFFADFKNIRFSK HHHHHHCCCCCCCCHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCEEEE FHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNRKVGIWKGVLKKIDVKTSWGQ EEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHH WISRNNPLIFYHIKNSINFKNIKKIKNKNAFYSAINNIQTSLFKLIRQSPVKFQTDLFFN HHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE TQFQWKLRENITNLKLFLKGSNINLEKKIKEKIMFEKISAVNLYINFKKNNFITKWIIKK CEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEEEEEC SKNSLKVNKISGFLNIYDFFHEKKIEGKVFLSDFSCSFLNFFENFFTKIQGKFSGNINFL CCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEECCCEEEE GTIYQPQISADINFQDFYIKSDKIFKYMLLFFCSFPNKIENIKINQEIIMKKGNALFKLN EEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCEEECHHHEEECCCEEEEEH SVVKNNISHIKWNILFHSNKLAIVLFPKIKLNFSSQLNLYYFLSKYDLIGYLKFSFFSFK HHHHCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEEEEEE INEKNFLF ECCCCCCH >Mature Secondary Structure SLYQRYLSKSLIFIFSLFFLILFFLESSIGFKYFFNFTNYFFIGLKTEEISGNWRDFKL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEHHCCCCCCEEEE KKINFNIFGTSIKAESVHIITDPISLFKVSTILKKIKTKNLVISFNKKIKKVALKNNFLK EEEEEEEEEEEEEECEEEEEECCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCHH EKKIKNTIFFKHSLILRKIYSDKILLKTQKKNIFLFGVFSGLQLSNDTCTFLPTKINSIY HHHHHHEEEEHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCEECCCEEEEEEEECCEEE IDSSMRNVKNIDNKKSNFFIKKDIFYRNKIDNALSFFSIFKNFFIPININLINLKCNQLK EECHHHHHHCCCCCCCCEEEEECEEEHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEEE FFNRTFLDIYKIKMSAQLKKNILKIKKIQIYSKYFKTKSKGKIFFRSDFSIFFIVKNEMS ECCHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCEE INIINNKAMNLLFKDTIDHKLNFKSNNLIKFNIHGEISLDDLNYPIHINLHLNRLFLPIS EEEECCCCEEEEEECCCCCEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEC KNLILSSKNFNFSLKGKINNYFLSLKNIINISGMPSFFISISAIGNIQNVVIKKIHFFPF CCEEEECCCCCEEEEECCCEEEEEEHHHEECCCCCEEEEEEEECCCHHHHHHHHHHHCHH FKEIKTKKFIKIKKEIDYNKYITQLAGKMRILSDFNKQSSNIFLPYFHVYGDFMRKKISV HHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH LGSLYYRKLNGITIPRINFLLGKNKGHISGSISKKVNLRSSIYANNLNYFSPNLKGIIKA HHHHHHHHHCCEEECEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHHHHHHH TLNIYSFCSLPSFSSVILGQKINWKNILYFNNIKITTNGNLKKSFPNKFFADFKNIRFSK HHHHHHCCCCCCCCHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCEEEE FHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNRKVGIWKGVLKKIDVKTSWGQ EEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHH WISRNNPLIFYHIKNSINFKNIKKIKNKNAFYSAINNIQTSLFKLIRQSPVKFQTDLFFN HHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE TQFQWKLRENITNLKLFLKGSNINLEKKIKEKIMFEKISAVNLYINFKKNNFITKWIIKK CEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEEEEEC SKNSLKVNKISGFLNIYDFFHEKKIEGKVFLSDFSCSFLNFFENFFTKIQGKFSGNINFL CCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEECCCEEEE GTIYQPQISADINFQDFYIKSDKIFKYMLLFFCSFPNKIENIKINQEIIMKKGNALFKLN EEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCEEECHHHEEECCCEEEEEH SVVKNNISHIKWNILFHSNKLAIVLFPKIKLNFSSQLNLYYFLSKYDLIGYLKFSFFSFK HHHHCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEEEEEE INEKNFLF ECCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12089438