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The map label for this gene is fliR

Identifier: 21672369

GI number: 21672369

Start: 86785

End: 87561

Strand: Direct

Name: fliR

Synonym: BUsg077

Alternate gene names: 21672369

Gene position: 86785-87561 (Clockwise)

Preceding gene: 21672368

Following gene: 21672372

Centisome position: 13.53

GC content: 21.24

Gene sequence:

>777_bases
ATGTTAACTTTTAATAGTTTCAATTTAGCCATTTTAATCAGTAATTTTTTTTGGCCTTTGGTTCGGATTTTAGCATTTTT
TTCAACGGCACCTATTTTTAATGATCAAAATGTAAATAAAAAAGTTAAAATAATCTTATCTTTTTTAATTGCTTTTTTAA
TAAAACCTTTTTTACCTAAAGTAAATGTAGAATTATTTTCTATAATAGGTTTGTTTTTATTATTCCAGCAAATTTTAATT
GGTATAGCTTTAGGATTAACTTGTCAATTTTTATTTGCTGCATTTACTTTATCTGGAGAAATAATAGCTCTACAGATCGG
TTTGTCTTTTGCAAATTTTTTTAATTCAAATCGATATATAGGTACTTCTTTAATATCACGTTGGTTGAATATTTTAAATC
TATTGTTTTTTTTAACATTGAATGTTCATCTTTATTTAGTTTTTATGTTGATAGATAGTTTTTACAAAATACCAGTTGAT
GTTAATTTTTTAAGTGCTAATATTTTTTTTATTTTCTTAAAGTTTTCTAGTAATATTTTTTTGAATGGTGTTATGTTTGC
TTTACCAATTATGATTTTCTTTTTGATATCTACTCTAATAATGAGTATTTTAAATCGTCTATCTCCTCAAATATCTATTT
TTTCTATTGGTTTTCCATTAAATTTATTGATAGGAATATTAATTTTATACTATTTAATGTCTATGTCTTTTCCTTTTTTT
AAAAGTTTAGTTAATCAATTAATTTCATTCATATTTTATACTTTTTTAAAAATATAG

Upstream 100 bases:

>100_bases
TTTTAGTTGTAATAACTTTACTTGGTCCTTGGATGTTAGGTGTTATGTTAGATTATATGCATAACTTATTTTACAATATA
CCATCAATTATTATAAGATA

Downstream 100 bases:

>100_bases
TTTTTATTAAATGTAGAAATATATTTAATATTTTTAAGAAAATTTAAATTTTAAAAGATTTTTCATTTCTAAAATAAAGT
ATAATTTTTATAAAATTATA

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLTFNSFNLAILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPKVNVELFSIIGLFLLFQQILI
GIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISRWLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVD
VNFLSANIFFIFLKFSSNIFLNGVMFALPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFF
KSLVNQLISFIFYTFLKI

Sequences:

>Translated_258_residues
MLTFNSFNLAILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPKVNVELFSIIGLFLLFQQILI
GIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISRWLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVD
VNFLSANIFFIFLKFSSNIFLNGVMFALPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFF
KSLVNQLISFIFYTFLKI
>Mature_258_residues
MLTFNSFNLAILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPKVNVELFSIIGLFLLFQQILI
GIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISRWLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVD
VNFLSANIFFIFLKFSSNIFLNGVMFALPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFF
KSLVNQLISFIFYTFLKI

Specific function: Role in flagellar biosynthesis

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family

Homologues:

Organism=Escherichia coli, GI1788261, Length=232, Percent_Identity=46.551724137931, Blast_Score=193, Evalue=1e-50,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIR_BUCAP (Q8KA35)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660436.1
- EnsemblBacteria:   EBBUCT00000000032
- GeneID:   1005893
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg077
- GeneTree:   EBGT00050000007701
- HOGENOM:   HBG700695
- OMA:   QLNIFAI
- ProtClustDB:   CLSK315206
- BioCyc:   BAPH198804:BUSG077-MONOMER
- InterPro:   IPR006303
- InterPro:   IPR002010
- PRINTS:   PR00953
- TIGRFAMs:   TIGR01400

Pfam domain/function: PF01311 Bac_export_1

EC number: NA

Molecular weight: Translated: 29667; Mature: 29667

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc111aac)-; HASH(0xae47dbc)-; HASH(0xb277618)-; HASH(0xb27be78)-; HASH(0x96a1b44)-; HASH(0xb2540b0)-; HASH(0xb30a40c)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFNSFNLAILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPK
CCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
VNVELFSIIGLFLLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCH
GTSLISRWLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHEEEECCCCHH
LNGVMFALPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHH
KSLVNQLISFIFYTFLKI
HHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MLTFNSFNLAILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPK
CCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
VNVELFSIIGLFLLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCH
GTSLISRWLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHEEEECCCCHH
LNGVMFALPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHH
KSLVNQLISFIFYTFLKI
HHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438