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The map label for this gene is ccdA-2 [H]

Identifier: 30263613

GI number: 30263613

Start: 3429450

End: 3430157

Strand: Reverse

Name: ccdA-2 [H]

Synonym: BA_3727

Alternate gene names: 30263613

Gene position: 3430157-3429450 (Counterclockwise)

Preceding gene: 30263614

Following gene: 30263612

Centisome position: 65.62

GC content: 34.32

Gene sequence:

>708_bases
ATGCAAGATATTAGTATTTTTTTAGCGTTTGGCGCCGGGTTTTTATCATTTATTTCCCCATGTTGCTTGCCGCTTTATCC
GGCATTTCTATCATATATAACAGGTATGTCGGTTTCTGAGCTGAAAGAAGAAAATGCAATGCTTCGCAAAAGAAGTATGA
TACATACAGCGTTTTTCTTACTTGGATTTTCAATTATATTTATTGCAATTGGATTTGGTACAAGTTTTATTGGAGGCATC
TTTACAAATTATAAAGATTTAATTAGACAGTTAGGTGGTATATTTATCATCGTGTTCGGTCTTATTATTGTCGGTGTGTT
TAAGCCGAAGTTTTTAATGCAAGATCGTAAATTTACGTTTAAAAATCGTCCGAGTGGTTATTTTGGATCTGTTTTAATTG
GGTTGGCATTTGCTGCAGGGTGGACGCCTTGTACAGGACCTATTTTAGTGTCTGTAATCGGATTAGCAGCAACAAATCCA
GAATCAGCAATGATTTATATGATCGCATATATACTTGGATTCGCTATTCCGTTCTTCGTGCTATCATTCTTTATTACGAA
AATGTCTTGGATTAAAAGAAATAGTATGAAGTTCATGAAAATCGGGGGATACGTTATGATTGTCATGGGTATCTTCCTAT
ATTTTAACTGGATGACGAAAATTATCGTATATTTCTCAAGTTTATTTGGTGGATTTACTGGTTTTTAG

Upstream 100 bases:

>100_bases
GGTAGTTTTTCTTATTATCACGTTGGAAAAGTGATTTCACGAATTGTTCATAGTATTTTTACGTGTTTTTGCTACAATAT
GTAAGGAGAGGAGTGGAACA

Downstream 100 bases:

>100_bases
TATTATTCTGTGAAAATGTTGGAAATACTAACGGAAAAGCATATAATGAAAGTATATTTTGCATATAGCCACAAAAAAGG
ATGAGAAAATATGAACATAG

Product: cytochrome c-type biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIGGI
FTNYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTFKNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNP
ESAMIYMIAYILGFAIPFFVLSFFITKMSWIKRNSMKFMKIGGYVMIVMGIFLYFNWMTKIIVYFSSLFGGFTGF

Sequences:

>Translated_235_residues
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIGGI
FTNYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTFKNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNP
ESAMIYMIAYILGFAIPFFVLSFFITKMSWIKRNSMKFMKIGGYVMIVMGIFLYFNWMTKIIVYFSSLFGGFTGF
>Mature_235_residues
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIGGI
FTNYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTFKNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNP
ESAMIYMIAYILGFAIPFFVLSFFITKMSWIKRNSMKFMKIGGYVMIVMGIFLYFNWMTKIIVYFSSLFGGFTGF

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26263; Mature: 26263

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGFSIIFIAIGFGTSFIGGIFTNYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
KNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNPESAMIYMIAYILGFAIPFFV
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LSFFITKMSWIKRNSMKFMKIGGYVMIVMGIFLYFNWMTKIIVYFSSLFGGFTGF
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGFSIIFIAIGFGTSFIGGIFTNYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
KNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNPESAMIYMIAYILGFAIPFFV
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LSFFITKMSWIKRNSMKFMKIGGYVMIVMGIFLYFNWMTKIIVYFSSLFGGFTGF
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]