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The map label for this gene is yodB [H]

Identifier: 77748605

GI number: 77748605

Start: 1943467

End: 1943976

Strand: Reverse

Name: yodB [H]

Synonym: XAC1686

Alternate gene names: 77748605

Gene position: 1943976-1943467 (Counterclockwise)

Preceding gene: 21242450

Following gene: 21242434

Centisome position: 37.56

GC content: 67.45

Gene sequence:

>510_bases
ATGCGCGTGCTGCACTGGCTCACCGTGCTGTGCCTGACCATGGCCGCCACGCTGATCCTGCTGCGCGCCGAACTGGATGG
CCGCGCACTGCGTCAGTGGCTGCTGGAAGGCCACCGCCACTTTGGCTTGCTGGTGCTGGTGCTGTTTGCGTTACGCATCG
GGTTACGCCTGCGTTTGCGCAGATTGCCGCCCGGTCCGCCCGCATCGCTGCCGATGCGCCTGGCCGCTGGCGCCACGCAT
GTGGCGATGTACGGCCTGATGCTTGCGCTGCCATTGCTGGGCTGGTCGCTGAGCAGCGCCTACGGCAAGCAGGTGTATTT
CTTCGGCATCCCCTTGCCCGCGCTGGTCGCGCCGGACGGCGACCTCGGCGACACCCTCGGCACCTGGCACTTGAATGCGG
CCTGGGCGCTGCTGGCGCTGGTGCTACTGCATATCGGCGCCGCGCTTTGGCATCACCTGGTGTTGCGCGACGGTCTGCTG
CGTCGCGTCTTACCGGGCAAGCGCGCATGA

Upstream 100 bases:

>100_bases
CCCCCCGGCGCCCGCCAGCGCTCCCGTCAACGGCACAGACACGCTGCCCCCGGCAGAACGGGCGCCCGCAGCCGCGCAGG
TACCGCCCTTGCCCAAAGCG

Downstream 100 bases:

>100_bases
GCCGCCGCCCCCCGCCGTCTGTCATTCGTTTTCTCGCCGATTCCCGCACCACTGCATCCCGCACCGTCGAACAAGGACTT
TCCATGCCCGCTTTCCAGCC

Product: cytochrome like B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRVLHWLTVLCLTMAATLILLRAELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATH
VAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLGDTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLL
RRVLPGKRA

Sequences:

>Translated_169_residues
MRVLHWLTVLCLTMAATLILLRAELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATH
VAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLGDTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLL
RRVLPGKRA
>Mature_169_residues
MRVLHWLTVLCLTMAATLILLRAELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATH
VAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLGDTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLL
RRVLPGKRA

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=168, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787296, Length=137, Percent_Identity=37.2262773722628, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 18628; Mature: 18628

Theoretical pI: Translated: 11.93; Mature: 11.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLHWLTVLCLTMAATLILLRAELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLR
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDG
CCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCC
DLGDTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRVLHWLTVLCLTMAATLILLRAELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLR
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDG
CCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCC
DLGDTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]