Click here to switch to the map view.

The map label for this gene is slyA [H]

Identifier: 21245015

GI number: 21245015

Start: 5088932

End: 5089384

Strand: Direct

Name: slyA [H]

Synonym: XAC4303

Alternate gene names: 21245015

Gene position: 5088932-5089384 (Clockwise)

Preceding gene: 21245010

Following gene: 21245016

Centisome position: 98.33

GC content: 68.65

Gene sequence:

>453_bases
ATGAAAACCGCTCTTTCTCCACGCGCCCAGCTCAGTTCCGGCCTGCTGGTGGCCGCCCGTCAGTGGCAACGCTTGGCCGA
CCAGGCGTTCTCCGAGTTCGACCTGTCCAGCGCCTGCACCGGGCCATTGCTGATGATCGGGCGCTCCGGCGGCGGCATCC
GTCAGGTGGCGCTGGCCCAGCAACTGGGCATGGAAGGCCCCTCGCTGGTGCGCTTGCTGGACAAGTTGGCCGCGCAGGGC
CTGCTGCGCCGCGAGGCCGACAGCAGCGACCGCCGCGCCAACCAGCTGTGGCTCACCGATGCAGGCCAGGCGCTGGTTGG
CCAGATCGAGATCCGCCTGGACGCACTGCGTGCGCAGGTGTTTGGCGCACTCAGCGATGCCGACGTGCAGGTGGTACTGA
CCTTGTGGGAGCAGATCGCGCAGGCGCATGCGCGGCTGAGCCAGGCCGACTGA

Upstream 100 bases:

>100_bases
GTACCTGAGGACTGCCCGGCCGCCCCAGTGGCGGTTGCGCCAGCATGCGGATATTCAGTGACTACTGATTCATTTATGAA
TTGATAGCATCCTATCTATT

Downstream 100 bases:

>100_bases
GTCGGCTGTCGGCGTCGCGCGCGACGCCCGTTGTGCCCTTTCCGATGCCCGTGCGCGCTGCATCGGGTGTTGTGGTTCTT
TCTCCAGGATGTGCCCGATG

Product: cryptic hemolysin transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKTALSPRAQLSSGLLVAARQWQRLADQAFSEFDLSSACTGPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLAAQG
LLRREADSSDRRANQLWLTDAGQALVGQIEIRLDALRAQVFGALSDADVQVVLTLWEQIAQAHARLSQAD

Sequences:

>Translated_150_residues
MKTALSPRAQLSSGLLVAARQWQRLADQAFSEFDLSSACTGPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLAAQG
LLRREADSSDRRANQLWLTDAGQALVGQIEIRLDALRAQVFGALSDADVQVVLTLWEQIAQAHARLSQAD
>Mature_150_residues
MKTALSPRAQLSSGLLVAARQWQRLADQAFSEFDLSSACTGPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLAAQG
LLRREADSSDRRANQLWLTDAGQALVGQIEIRLDALRAQVFGALSDADVQVVLTLWEQIAQAHARLSQAD

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=125, Percent_Identity=32, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16148; Mature: 16148

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALSPRAQLSSGLLVAARQWQRLADQAFSEFDLSSACTGPLLMIGRSGGGIRQVALAQ
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHH
QLGMEGPSLVRLLDKLAAQGLLRREADSSDRRANQLWLTDAGQALVGQIEIRLDALRAQV
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCHHHHHHHHHHHHHHHHHH
FGALSDADVQVVLTLWEQIAQAHARLSQAD
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTALSPRAQLSSGLLVAARQWQRLADQAFSEFDLSSACTGPLLMIGRSGGGIRQVALAQ
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHH
QLGMEGPSLVRLLDKLAAQGLLRREADSSDRRANQLWLTDAGQALVGQIEIRLDALRAQV
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCHHHHHHHHHHHHHHHHHH
FGALSDADVQVVLTLWEQIAQAHARLSQAD
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA