| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is adh [H]
Identifier: 21244916
GI number: 21244916
Start: 4943735
End: 4945240
Strand: Direct
Name: adh [H]
Synonym: XAC4199
Alternate gene names: 21244916
Gene position: 4943735-4945240 (Clockwise)
Preceding gene: 21244915
Following gene: 21244922
Centisome position: 95.52
GC content: 63.81
Gene sequence:
>1506_bases TTGAACTCGCGTTTCGCACCGGGCGAGTGGAAGATCAATCGCACCACCGCCAAGACGCTCAAGCCGGCGTGGACGCTGAC CACCACCGGCGACATCTCGGCCACGCCCAGCGTCGAAGGCGGCACCCTGTATGTGCCCGACTGGGGTGGCACGCTGTATA GCGTGGACACGCAAACCGGCAAGCCGAACTGGCAAGCCAAACTGTCCGATTACACCGGCAACGCCAACTCGGTGACGCGC AACACGCCGGCCATCAGCGCCAAGAGCATCATCGTTGGCGACCAGGTCGCCGGTACCTTGCTGGCGCTGGACAAGAAGAC CGGCAAGCTGCTGTGGAAGACCACGGTGGAAGCCAACCCGCAGGCGCGCATCACCTCCTCGCCGGTCATCTACGGCAACC GCATCTACGTCGGCGTCTCCTCCGGCGACTGGGGCAACCTGGCGGCCAACCACACCTTCAGCTTCCGCGGCAGCGTGGTG GCGGTAGATCTGAACACCGGCAAAAAGGTATGGCAGTTCTATAACGTGCCCGAGGGCTACACCGGCGCCTCGGTGTGGGG CCAGGTGGCCATCGACCCGATCAACCGTCGCCTGTATTTCGGCACCGGCAACAACTACAACATTCCGCAGGGCGTGGGTA ACTGCATTTCAAACGCGCGCTCTTATCGCGGCAGCGAACTCACCGTGCAGGATGAGCTCGACTGCATGGCGCCGGACAAC TACGTCGATTCGGTGATTTCGTTAAATCTGGATACCGGCAAATTAGTCTGGGCCAACCGTGCACAGGGGTACGATGCGTG GAACCTGTCCTGCGTCGTGGCGCCGACCAACGGTCTGTGCCCCAACACGCAGGCAACCAACCTGACCGGCCCGGATTACG ACTTTGGCGGTGCTGGCGTGCAACTGTTTGCCGTGCCGCGCAACGGCAGGTTGCAGCAGTTGGTCGGCGCTGGTCAGAAG AGCGGCATCTACTGGGCCTTCGACGCCAAGACCGGCGCCAAGGTCTGGTCGACCCAGGTCGGCCCCGGCGGCACCACCGG TGGCGTGGAATGGGGTACCGCGTTCGACCCGTACAAGTCGCAGATCTACGTGGCCATCAACAACAACTCCAACGCGACTT ATACGCTGGGGCCGGCGAACGTGCAGACCCATAACGGCGGTTCGTGGGCCGCGCTGGACGCGGCAACCGGCAAGATCAAG TGGCAGGTCAAGGTGCCCGGCATCAACCCGGTGAATCCGACCGTGCCGGCGGGCGGCCAGGGTTCGCTGACGGTGTCGCC AAACCTGCTGTATGCCGGCTCGATGGCCGGCAATATGGTCGCACTGGACGCCGACACCGGCGCCACCGTGTGGAACTACA ACGCCAGCGGCTCGGTGATCAGTTCGCCGGCCATCGCAAACGGCGCGCTGTATTGGGGCGCCGGCTACGGCCGCTTCAAC TTCGGCACCGCGGCCACAGGCAACCAGCTGACCAAGTTCGTGCCCGATAACGCGGCAGCCAAGTAA
Upstream 100 bases:
>100_bases TACCGAGGCATTCGCACGCTCCGGCCAGGTCTGGCGCAGCTTCGGTCAAGACCTTCCCTTCGCCAGCCCCACCAACTGGA CCACCGCCGGTGGCGGCTAC
Downstream 100 bases:
>100_bases GCGGCGTCTGCAGGACGGCAGTGACGCGTCCTGTCTGCACACGACACTGCCGCCTTCGGGCGGCAGTGTCTTTCAGTGAT TGTTGTTGGGCTGGTGTGGC
Product: polyvinylalcohol dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MNSRFAPGEWKINRTTAKTLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQTGKPNWQAKLSDYTGNANSVTR NTPAISAKSIIVGDQVAGTLLALDKKTGKLLWKTTVEANPQARITSSPVIYGNRIYVGVSSGDWGNLAANHTFSFRGSVV AVDLNTGKKVWQFYNVPEGYTGASVWGQVAIDPINRRLYFGTGNNYNIPQGVGNCISNARSYRGSELTVQDELDCMAPDN YVDSVISLNLDTGKLVWANRAQGYDAWNLSCVVAPTNGLCPNTQATNLTGPDYDFGGAGVQLFAVPRNGRLQQLVGAGQK SGIYWAFDAKTGAKVWSTQVGPGGTTGGVEWGTAFDPYKSQIYVAINNNSNATYTLGPANVQTHNGGSWAALDAATGKIK WQVKVPGINPVNPTVPAGGQGSLTVSPNLLYAGSMAGNMVALDADTGATVWNYNASGSVISSPAIANGALYWGAGYGRFN FGTAATGNQLTKFVPDNAAAK
Sequences:
>Translated_501_residues MNSRFAPGEWKINRTTAKTLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQTGKPNWQAKLSDYTGNANSVTR NTPAISAKSIIVGDQVAGTLLALDKKTGKLLWKTTVEANPQARITSSPVIYGNRIYVGVSSGDWGNLAANHTFSFRGSVV AVDLNTGKKVWQFYNVPEGYTGASVWGQVAIDPINRRLYFGTGNNYNIPQGVGNCISNARSYRGSELTVQDELDCMAPDN YVDSVISLNLDTGKLVWANRAQGYDAWNLSCVVAPTNGLCPNTQATNLTGPDYDFGGAGVQLFAVPRNGRLQQLVGAGQK SGIYWAFDAKTGAKVWSTQVGPGGTTGGVEWGTAFDPYKSQIYVAINNNSNATYTLGPANVQTHNGGSWAALDAATGKIK WQVKVPGINPVNPTVPAGGQGSLTVSPNLLYAGSMAGNMVALDADTGATVWNYNASGSVISSPAIANGALYWGAGYGRFN FGTAATGNQLTKFVPDNAAAK >Mature_501_residues MNSRFAPGEWKINRTTAKTLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQTGKPNWQAKLSDYTGNANSVTR NTPAISAKSIIVGDQVAGTLLALDKKTGKLLWKTTVEANPQARITSSPVIYGNRIYVGVSSGDWGNLAANHTFSFRGSVV AVDLNTGKKVWQFYNVPEGYTGASVWGQVAIDPINRRLYFGTGNNYNIPQGVGNCISNARSYRGSELTVQDELDCMAPDN YVDSVISLNLDTGKLVWANRAQGYDAWNLSCVVAPTNGLCPNTQATNLTGPDYDFGGAGVQLFAVPRNGRLQQLVGAGQK SGIYWAFDAKTGAKVWSTQVGPGGTTGGVEWGTAFDPYKSQIYVAINNNSNATYTLGPANVQTHNGGSWAALDAATGKIK WQVKVPGINPVNPTVPAGGQGSLTVSPNLLYAGSMAGNMVALDADTGATVWNYNASGSVISSPAIANGALYWGAGYGRFN FGTAATGNQLTKFVPDNAAAK
Specific function: Catalyzes the oxidation of primary alcohols except for methanol that is not a substrate [H]
COG id: COG1520
COG function: function code S; FOG: WD40-like repeat
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF00034 Cytochrom_C; PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.2.8 [H]
Molecular weight: Translated: 52817; Mature: 52817
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSRFAPGEWKINRTTAKTLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQTG CCCCCCCCCEEEECCHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCC KPNWQAKLSDYTGNANSVTRNTPAISAKSIIVGDQVAGTLLALDKKTGKLLWKTTVEANP CCCCEEEEEECCCCCCCEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC QARITSSPVIYGNRIYVGVSSGDWGNLAANHTFSFRGSVVAVDLNTGKKVWQFYNVPEGY CEEEECCCEEECCEEEEEECCCCCCCEECCCEEEECCCEEEEECCCCCEEEEEECCCCCC TGASVWGQVAIDPINRRLYFGTGNNYNIPQGVGNCISNARSYRGSELTVQDELDCMAPDN CCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH YVDSVISLNLDTGKLVWANRAQGYDAWNLSCVVAPTNGLCPNTQATNLTGPDYDFGGAGV HHCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE QLFAVPRNGRLQQLVGAGQKSGIYWAFDAKTGAKVWSTQVGPGGTTGGVEWGTAFDPYKS EEEEECCCCCHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC QIYVAINNNSNATYTLGPANVQTHNGGSWAALDAATGKIKWQVKVPGINPVNPTVPAGGQ EEEEEEECCCCEEEEECCCCEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC GSLTVSPNLLYAGSMAGNMVALDADTGATVWNYNASGSVISSPAIANGALYWGAGYGRFN CCEEECCCEEEECCCCCCEEEEECCCCCEEEEECCCCCEEECCCEECCEEEECCCCCEEC FGTAATGNQLTKFVPDNAAAK CCCCCCCCCEEEECCCCCCCC >Mature Secondary Structure MNSRFAPGEWKINRTTAKTLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQTG CCCCCCCCCEEEECCHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCC KPNWQAKLSDYTGNANSVTRNTPAISAKSIIVGDQVAGTLLALDKKTGKLLWKTTVEANP CCCCEEEEEECCCCCCCEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC QARITSSPVIYGNRIYVGVSSGDWGNLAANHTFSFRGSVVAVDLNTGKKVWQFYNVPEGY CEEEECCCEEECCEEEEEECCCCCCCEECCCEEEECCCEEEEECCCCCEEEEEECCCCCC TGASVWGQVAIDPINRRLYFGTGNNYNIPQGVGNCISNARSYRGSELTVQDELDCMAPDN CCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH YVDSVISLNLDTGKLVWANRAQGYDAWNLSCVVAPTNGLCPNTQATNLTGPDYDFGGAGV HHCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE QLFAVPRNGRLQQLVGAGQKSGIYWAFDAKTGAKVWSTQVGPGGTTGGVEWGTAFDPYKS EEEEECCCCCHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC QIYVAINNNSNATYTLGPANVQTHNGGSWAALDAATGKIKWQVKVPGINPVNPTVPAGGQ EEEEEEECCCCEEEEECCCCEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCC GSLTVSPNLLYAGSMAGNMVALDADTGATVWNYNASGSVISSPAIANGALYWGAGYGRFN CCEEECCCEEEECCCCCCEEEEECCCCCEEEEECCCCCEEECCCEECCEEEECCCCCEEC FGTAATGNQLTKFVPDNAAAK CCCCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA