Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 21244784

GI number: 21244784

Start: 4763763

End: 4764554

Strand: Direct

Name: yadH [H]

Synonym: XAC4067

Alternate gene names: 21244784

Gene position: 4763763-4764554 (Clockwise)

Preceding gene: 21244783

Following gene: 21244785

Centisome position: 92.04

GC content: 64.27

Gene sequence:

>792_bases
ATGTCCGCCACGCCCGCCACACCCCGCCAACGCAACTGGATTGCGCTGCGCACCATCGTGCGCCGCGAAGTGCAGCGCAT
CCTGCGCATCTGGGGCCAGACCCTGGTGCCGCCGGCCATCACCATGACGCTGTACTTTTTGATCTTCGGCGGGCTGATCG
GCTCGCGCGTGGGCGAAATGGGCGGCTACAGCTACATGCAATTCATCGTGCCGGGCCTGGTGATGATGAGCGTGATCCAG
AACAGCTACGGCAACATCTCTTCGAGTTTCTTCGGCGCCAAGTTCGGCCGCCATGTCGAAGAGCTGCTGGTCAGCCCGAT
GCCCAACTGGGTGATCCTGTGGGGCTACGTGTCCGGCGCGGTGCTGCGCGGGGTGATGGTCGGGGCGATCGTGCTGATCA
TCGCGATGTTCTTCACTCCGGTGCGGATCCCGCATCCATTCGTCACCCTGACCACGGTGCTGCTGGGCGCGACCATCTTC
TCGCTGGCTGGGTTCGTCAACGCGGTTTACGCCAAGAAGTTCGACGACGTGGCGATCGTGCCCACCTTCATCCTGACCCC
GCTGACCTACCTGGGCGGCGTGTTCTATTCGGTGAAACTGCTGCCCGGCTGGGCCGAAGCCGCGACGCATGCCAACCCGA
TCTTCTACATGGTCAACGCGTTCCGCTACGGCCTGCTCGGTAGCTCGGATGTGCCGATCTGGGTGGCCTACGCACTGATG
CTGGGCTTTGTCGCCGTGCTCAGCGCGCTGGCGTTGTGGCTGCTGCGCCGGGGCGTGGGGCTGCGGAGCTGA

Upstream 100 bases:

>100_bases
TTCGCCTGACCGGGCCCGGCGAGACCGTCGCCGCCCCGGCTCCTGCCGAAGCGGCGCCCGTGCGCCCGGCAGGCCACCCA
TGAGTCCTTCGGAGCCGTCG

Downstream 100 bases:

>100_bases
TGGCACAGTTCAGCGACTACATCGTCTTTGTCGATGAGAGTGGCGACCATGGGATGGCCGTTGACTACGCACGTGCTCTG
CGAAGCGCGGGGATGCAGTG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSATPATPRQRNWIALRTIVRREVQRILRIWGQTLVPPAITMTLYFLIFGGLIGSRVGEMGGYSYMQFIVPGLVMMSVIQ
NSYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVSGAVLRGVMVGAIVLIIAMFFTPVRIPHPFVTLTTVLLGATIF
SLAGFVNAVYAKKFDDVAIVPTFILTPLTYLGGVFYSVKLLPGWAEAATHANPIFYMVNAFRYGLLGSSDVPIWVAYALM
LGFVAVLSALALWLLRRGVGLRS

Sequences:

>Translated_263_residues
MSATPATPRQRNWIALRTIVRREVQRILRIWGQTLVPPAITMTLYFLIFGGLIGSRVGEMGGYSYMQFIVPGLVMMSVIQ
NSYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVSGAVLRGVMVGAIVLIIAMFFTPVRIPHPFVTLTTVLLGATIF
SLAGFVNAVYAKKFDDVAIVPTFILTPLTYLGGVFYSVKLLPGWAEAATHANPIFYMVNAFRYGLLGSSDVPIWVAYALM
LGFVAVLSALALWLLRRGVGLRS
>Mature_262_residues
SATPATPRQRNWIALRTIVRREVQRILRIWGQTLVPPAITMTLYFLIFGGLIGSRVGEMGGYSYMQFIVPGLVMMSVIQN
SYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVSGAVLRGVMVGAIVLIIAMFFTPVRIPHPFVTLTTVLLGATIFS
LAGFVNAVYAKKFDDVAIVPTFILTPLTYLGGVFYSVKLLPGWAEAATHANPIFYMVNAFRYGLLGSSDVPIWVAYALML
GFVAVLSALALWLLRRGVGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=251, Percent_Identity=56.1752988047809, Blast_Score=291, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28932; Mature: 28801

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SATPATPRQRNWIALRTIVRREVQRILRIWGQTLVPPAITMTLYFLIFGGLIGSRVGEM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
GGYSYMQFIVPGLVMMSVIQNSYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVSGA
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
VLRGVMVGAIVLIIAMFFTPVRIPHPFVTLTTVLLGATIFSLAGFVNAVYAKKFDDVAIV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
PTFILTPLTYLGGVFYSVKLLPGWAEAATHANPIFYMVNAFRYGLLGSSDVPIWVAYALM
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LGFVAVLSALALWLLRRGVGLRS
HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]