Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is ybjT [C]
Identifier: 21244318
GI number: 21244318
Start: 4261220
End: 4262164
Strand: Direct
Name: ybjT [C]
Synonym: XAC3593
Alternate gene names: 21244318
Gene position: 4261220-4262164 (Clockwise)
Preceding gene: 21244317
Following gene: 21244319
Centisome position: 82.33
GC content: 62.12
Gene sequence:
>945_bases ATGGCACAGAAGAATGACAAGATTGTCCTGACCGGCGCTGCAGGGCTGGTGGGGCAGAACCTGATCGTCGAACTGAAGCG ACAGGGCTATACCCGGCTGGTAGCCATCGATAAGCACGCGCACAATCTCGACATCCTGCGAGGCTTGCATGCGGATGTGG AGACGATCCTTGCGGATCTGGCTGAGCCGGGCGAATGGAGCAAGGCGTTTAAAGGCGCTCAGCTCGTCGTGCAGTTGCAC GCGCAGATCACCGGCAAGACCACCGACCTGTTCACCCGCAACAACCTGACCGCGACGGCGAACGTGCTCGACGCCTGCCG CGCGGCAAACGTGCCTTACATGGTGCACATCAGCTCCTCGGTGGTGAACTCGGTGGCCAAGGACGACTACACCAACACCA AGCGCGCACAGGAAGAGATGGTGGTCGCCAGCGGCCTGCGCCACTGCGTGCTGCGTCCGACCCTGATGTTCGGCTGGTTC GACCCCAAGCACCTGGGCTGGCTGTCGCGCTTCATGGCCAAAACGCCGGTGTTCCCGATCCCGGGCGATGGCCGCTTCAT GCGCCAGCCGCTGTACGAGCGCGACTTCTGCCGCTGCATCGCCAAGTGCATCGAACGCGAGCCCGACGGCGAGGTTTACG ACATCGTCGGCGATACGCGCGTGGACTACGTCGACATCATCAAGACGATCAAGCGGGTCAAGAAACTGCACACCCTGATC GTGCACATCCCGATCGGCTTCTTCGCCTTCCTTCTGCGCGTGTATTCGCTCTTCAGTTCCAAGCCGCCGTTCACCGCCGA CCAGTTGAAGGCGCTGAGCGCCGGCGACGACTTCAAGGGCGTCGATACCGAAGCGGTGTTCGGCGTACGCCAGACGCCGT TCGAAGACGCCATCCGCGAAAGCTATACCGACCCGCGCTACAGCCACATCGTGCTCAAGCGCTGA
Upstream 100 bases:
>100_bases GTCGCTTTCTTTCACAAACAAGCACCGACGGCGGCTCGACTAGCCACTTGCATTGCGCCGACGCACCTTGACTCCATTCA TCCGCTTTCGAGTTTGATTC
Downstream 100 bases:
>100_bases ACCGTCATACGAGACCAGAACCATGAGTACATTCGCGATCGTCGGCAGCGGCCCCATGGGCCTGATGGCTGCCATGGAAC TGTTGAAGAAGGGCCACCAG
Product: NAD dependent epimerase/dehydratase/dehydrogenase
Products: NA
Alternate protein names: NADH-Ubiquinone Oxidoreductase; NADH Dehydrogenase; NAD Dependent Epimerase/Dehydratase/Dehydrogenase; Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NADH Dehydrogenase/Oxidoreductase-Like Protein; Nucleoside-Diphosphate-Sugar Epimerases; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; NADH Dehydrogenase 1 Alpha Subcomplex; Transmembrane Oxidoreductase; NmrA-Like Protein; NADH Dehydrogenase/NADH Dehydrogenase Protein; NADH Dehydrogenase Subunit; Homolog NADH Dehydrogenase; Transmembrane Oxidoreductase Protein; Methyltransferase FkbM; NADH Dehydrogenase-Like Protein; Nucleoside-Diphosphate Sugar Epimerase; NADH-Ubiquinone Oxidoreductase -Like Protein; NAD Dependent Epimerase/Dehydratase Family Protein; NADH-Ubiquinone Oxidoreductase Putativ; NADH-Quinone Oxidoreductase; NADH-Ubiquinone Oxidoreductase Subunit
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MAQKNDKIVLTGAAGLVGQNLIVELKRQGYTRLVAIDKHAHNLDILRGLHADVETILADLAEPGEWSKAFKGAQLVVQLH AQITGKTTDLFTRNNLTATANVLDACRAANVPYMVHISSSVVNSVAKDDYTNTKRAQEEMVVASGLRHCVLRPTLMFGWF DPKHLGWLSRFMAKTPVFPIPGDGRFMRQPLYERDFCRCIAKCIEREPDGEVYDIVGDTRVDYVDIIKTIKRVKKLHTLI VHIPIGFFAFLLRVYSLFSSKPPFTADQLKALSAGDDFKGVDTEAVFGVRQTPFEDAIRESYTDPRYSHIVLKR
Sequences:
>Translated_314_residues MAQKNDKIVLTGAAGLVGQNLIVELKRQGYTRLVAIDKHAHNLDILRGLHADVETILADLAEPGEWSKAFKGAQLVVQLH AQITGKTTDLFTRNNLTATANVLDACRAANVPYMVHISSSVVNSVAKDDYTNTKRAQEEMVVASGLRHCVLRPTLMFGWF DPKHLGWLSRFMAKTPVFPIPGDGRFMRQPLYERDFCRCIAKCIEREPDGEVYDIVGDTRVDYVDIIKTIKRVKKLHTLI VHIPIGFFAFLLRVYSLFSSKPPFTADQLKALSAGDDFKGVDTEAVFGVRQTPFEDAIRESYTDPRYSHIVLKR >Mature_313_residues AQKNDKIVLTGAAGLVGQNLIVELKRQGYTRLVAIDKHAHNLDILRGLHADVETILADLAEPGEWSKAFKGAQLVVQLHA QITGKTTDLFTRNNLTATANVLDACRAANVPYMVHISSSVVNSVAKDDYTNTKRAQEEMVVASGLRHCVLRPTLMFGWFD PKHLGWLSRFMAKTPVFPIPGDGRFMRQPLYERDFCRCIAKCIEREPDGEVYDIVGDTRVDYVDIIKTIKRVKKLHTLIV HIPIGFFAFLLRVYSLFSSKPPFTADQLKALSAGDDFKGVDTEAVFGVRQTPFEDAIRESYTDPRYSHIVLKR
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35276; Mature: 35145
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQKNDKIVLTGAAGLVGQNLIVELKRQGYTRLVAIDKHAHNLDILRGLHADVETILADL CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH AEPGEWSKAFKGAQLVVQLHAQITGKTTDLFTRNNLTATANVLDACRAANVPYMVHISSS CCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHHHCCCCEEEEECHH VVNSVAKDDYTNTKRAQEEMVVASGLRHCVLRPTLMFGWFDPKHLGWLSRFMAKTPVFPI HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC PGDGRFMRQPLYERDFCRCIAKCIEREPDGEVYDIVGDTRVDYVDIIKTIKRVKKLHTLI CCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH VHIPIGFFAFLLRVYSLFSSKPPFTADQLKALSAGDDFKGVDTEAVFGVRQTPFEDAIRE HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHH SYTDPRYSHIVLKR HCCCCCCCEEEEEC >Mature Secondary Structure AQKNDKIVLTGAAGLVGQNLIVELKRQGYTRLVAIDKHAHNLDILRGLHADVETILADL CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH AEPGEWSKAFKGAQLVVQLHAQITGKTTDLFTRNNLTATANVLDACRAANVPYMVHISSS CCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHHHCCCCEEEEECHH VVNSVAKDDYTNTKRAQEEMVVASGLRHCVLRPTLMFGWFDPKHLGWLSRFMAKTPVFPI HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC PGDGRFMRQPLYERDFCRCIAKCIEREPDGEVYDIVGDTRVDYVDIIKTIKRVKKLHTLI CCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH VHIPIGFFAFLLRVYSLFSSKPPFTADQLKALSAGDDFKGVDTEAVFGVRQTPFEDAIRE HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHH SYTDPRYSHIVLKR HCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA