Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is 21242277
Identifier: 21242277
GI number: 21242277
Start: 1761852
End: 1763255
Strand: Reverse
Name: 21242277
Synonym: XAC1526
Alternate gene names: NA
Gene position: 1763255-1761852 (Counterclockwise)
Preceding gene: 21242278
Following gene: 21242270
Centisome position: 34.07
GC content: 67.02
Gene sequence:
>1404_bases ATGATCGGCCGTCTTGTCGTCCTGTTGATCGCACTCTGCCCCGGTGCGGCATTCGCCCAGGCCGCTGCGCTGACGCTGGA TGAGGTGCTGCAGTCGTCGGCACGCTCGGCACCGCAGATCGTCGAAGCGCTGGCCAAGGTGCGCCAGGCCGAAGGCAAGG GCATCTCGGCCGATGGCGCCTTCGACACGGTGTTCGACATCGAAGGCCGCTCGCGCGAGGCCGGCTATTACGACGGCAGT ACGATCGAAACCGGGGTCAAGCGGCCTTTCGAAGAGAACGGCGGCTATTACTACGGTGGCTACCGCTCCTCGCGCGGCTC CTTCCCGATCTACGAAGACAAGTCCTATACCGATCGCGGCGGCGAAGTGAAGGTCGGCGCGCTGTACGCGCTGCTGCGCG ACCGCGTGATCGACGAACGCCGCACCAAGCGCAGCATCGCCAGCACCGACATCGATGTGGCCAAGTACGAGGCGGAAATG GTGGCCATCGGCGTGCAGCGGCGCGCAGTGGATGCCTACCAGAACTGGGTCGCCGCCGGGCTGAAGTTGCGCGCCTACAA CGAGCTGCTGCAACTGGCCGAGCAACGCCGCAATGCGATTTCGCGCCAGGTCACGCTCGGTGCGCGCCCCACCATCTTGC TGACCGAAAACGACCAGAACCTGGTGCGCCGTCGCGCCTTGGTGGTCCGCTCGGAACAGGACTTCGCCAACGCGGCCAAC GCCTTGTCGCTGTATTTGCGCGACGACGCCGGCATGCCGCTGGTCGTTTCCGCCGAACGCCTGCCGGCCGACACCTCGGC GCTGGAAGGACTGGCCGGCGCCAGCAAGATCACCACGCCGGTGGAGCGCCCGGACTACCGCGCCGTGCTGACCCGCATCG ACCAGGCCACCGCGCGGCTGATGCTGGCGCAGAACGATCTCAAACCGCGCCTGGATGTCAGCGTGGAAGTCAGCAAGGAT CTGGGCCCGCCCGGCGTCGGCGGCCCGAACCGGTCGCTGACCGACGCCATCATCGGCTTTCGTTTCAGCGTGCCGCTGGA AAACCGCGCCGCCCGGGGCCGCGTGGCCGAAGCGCGCGCCGAGATCGAAGCGTTGGATCAGCGCAGCCGTTTTCTGCGCG ACCAGATTTCGATCGAGGTCGAATCGATCGTCATTTCGCTCAATGGCGCCGAACGGCTGGCCAAGATCGCCGATGAGGAA CGCGGCCTGGCAGACCGCCTGGCGGCCGCCGAGCGGCGGCGCTTCGAGCTGGGCTCGGGTGACTTTTTCCTGGTCAATCA GCGCGAGGAAACCGCCAACGACGCGCGCGTACGCCTGATCGATGCGCAGGCACGCATCGCCTCCGCGCGTGCAGAACTGG CGGCGGCCACCGCCGACCGGGATGCCTTGCAGCTGAGTCGTTGA
Upstream 100 bases:
>100_bases TCCCGCTGGAATTCGGCCGGCGCCCGGCTGCGGCTACGCAGGAAGACGGCAAGGCCAAGCCGGCCGCACCCAAGTCCGAA GACGAAGCGACGGGCAAGAA
Downstream 100 bases:
>100_bases TGGGTCGGCTGCGCGTCGGGCGGACGCGGTGATGCGGGGCAATTGCGCGGTTGTGCGAGCGACCTCGCGATGCCGCTGCT TGGCATCCTGTGGGTTGAAG
Product: multidrug efflux pump outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Efflux Protein; Outer Membrane Protein-Like Protein; Outer Membrane Protein-Like; Signal Peptide; Multidrug Efflux Protein Outer Membrane Component
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MIGRLVVLLIALCPGAAFAQAAALTLDEVLQSSARSAPQIVEALAKVRQAEGKGISADGAFDTVFDIEGRSREAGYYDGS TIETGVKRPFEENGGYYYGGYRSSRGSFPIYEDKSYTDRGGEVKVGALYALLRDRVIDERRTKRSIASTDIDVAKYEAEM VAIGVQRRAVDAYQNWVAAGLKLRAYNELLQLAEQRRNAISRQVTLGARPTILLTENDQNLVRRRALVVRSEQDFANAAN ALSLYLRDDAGMPLVVSAERLPADTSALEGLAGASKITTPVERPDYRAVLTRIDQATARLMLAQNDLKPRLDVSVEVSKD LGPPGVGGPNRSLTDAIIGFRFSVPLENRAARGRVAEARAEIEALDQRSRFLRDQISIEVESIVISLNGAERLAKIADEE RGLADRLAAAERRRFELGSGDFFLVNQREETANDARVRLIDAQARIASARAELAAATADRDALQLSR
Sequences:
>Translated_467_residues MIGRLVVLLIALCPGAAFAQAAALTLDEVLQSSARSAPQIVEALAKVRQAEGKGISADGAFDTVFDIEGRSREAGYYDGS TIETGVKRPFEENGGYYYGGYRSSRGSFPIYEDKSYTDRGGEVKVGALYALLRDRVIDERRTKRSIASTDIDVAKYEAEM VAIGVQRRAVDAYQNWVAAGLKLRAYNELLQLAEQRRNAISRQVTLGARPTILLTENDQNLVRRRALVVRSEQDFANAAN ALSLYLRDDAGMPLVVSAERLPADTSALEGLAGASKITTPVERPDYRAVLTRIDQATARLMLAQNDLKPRLDVSVEVSKD LGPPGVGGPNRSLTDAIIGFRFSVPLENRAARGRVAEARAEIEALDQRSRFLRDQISIEVESIVISLNGAERLAKIADEE RGLADRLAAAERRRFELGSGDFFLVNQREETANDARVRLIDAQARIASARAELAAATADRDALQLSR >Mature_467_residues MIGRLVVLLIALCPGAAFAQAAALTLDEVLQSSARSAPQIVEALAKVRQAEGKGISADGAFDTVFDIEGRSREAGYYDGS TIETGVKRPFEENGGYYYGGYRSSRGSFPIYEDKSYTDRGGEVKVGALYALLRDRVIDERRTKRSIASTDIDVAKYEAEM VAIGVQRRAVDAYQNWVAAGLKLRAYNELLQLAEQRRNAISRQVTLGARPTILLTENDQNLVRRRALVVRSEQDFANAAN ALSLYLRDDAGMPLVVSAERLPADTSALEGLAGASKITTPVERPDYRAVLTRIDQATARLMLAQNDLKPRLDVSVEVSKD LGPPGVGGPNRSLTDAIIGFRFSVPLENRAARGRVAEARAEIEALDQRSRFLRDQISIEVESIVISLNGAERLAKIADEE RGLADRLAAAERRRFELGSGDFFLVNQREETANDARVRLIDAQARIASARAELAAATADRDALQLSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51056; Mature: 51056
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGRLVVLLIALCPGAAFAQAAALTLDEVLQSSARSAPQIVEALAKVRQAEGKGISADGA CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC FDTVFDIEGRSREAGYYDGSTIETGVKRPFEENGGYYYGGYRSSRGSFPIYEDKSYTDRG CCEEEECCCCCCCCCCCCCCCCCHHHCCCHHHCCCEEECCEECCCCCCCCCCCCCCCCCC GEVKVGALYALLRDRVIDERRTKRSIASTDIDVAKYEAEMVAIGVQRRAVDAYQNWVAAG CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHC LKLRAYNELLQLAEQRRNAISRQVTLGARPTILLTENDQNLVRRRALVVRSEQDFANAAN CHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHEECCHHHHHHHH ALSLYLRDDAGMPLVVSAERLPADTSALEGLAGASKITTPVERPDYRAVLTRIDQATARL HEEEEEECCCCCCEEEEHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH MLAQNDLKPRLDVSVEVSKDLGPPGVGGPNRSLTDAIIGFRFSVPLENRAARGRVAEARA HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCHHCCHHHHHHH EIEALDQRSRFLRDQISIEVESIVISLNGAERLAKIADEERGLADRLAAAERRRFELGSG HHHHHHHHHHHHHHHHCEEEEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHEECCCC DFFLVNQREETANDARVRLIDAQARIASARAELAAATADRDALQLSR CEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHCCCC >Mature Secondary Structure MIGRLVVLLIALCPGAAFAQAAALTLDEVLQSSARSAPQIVEALAKVRQAEGKGISADGA CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC FDTVFDIEGRSREAGYYDGSTIETGVKRPFEENGGYYYGGYRSSRGSFPIYEDKSYTDRG CCEEEECCCCCCCCCCCCCCCCCHHHCCCHHHCCCEEECCEECCCCCCCCCCCCCCCCCC GEVKVGALYALLRDRVIDERRTKRSIASTDIDVAKYEAEMVAIGVQRRAVDAYQNWVAAG CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHC LKLRAYNELLQLAEQRRNAISRQVTLGARPTILLTENDQNLVRRRALVVRSEQDFANAAN CHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHEECCHHHHHHHH ALSLYLRDDAGMPLVVSAERLPADTSALEGLAGASKITTPVERPDYRAVLTRIDQATARL HEEEEEECCCCCCEEEEHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH MLAQNDLKPRLDVSVEVSKDLGPPGVGGPNRSLTDAIIGFRFSVPLENRAARGRVAEARA HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCHHCCHHHHHHH EIEALDQRSRFLRDQISIEVESIVISLNGAERLAKIADEERGLADRLAAAERRRFELGSG HHHHHHHHHHHHHHHHCEEEEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHEECCCC DFFLVNQREETANDARVRLIDAQARIASARAELAAATADRDALQLSR CEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA