Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 21242221

GI number: 21242221

Start: 1694935

End: 1695174

Strand: Reverse

Name: yjjV [H]

Synonym: XAC1469

Alternate gene names: 21242221

Gene position: 1695174-1694935 (Counterclockwise)

Preceding gene: 21242222

Following gene: 21242219

Centisome position: 32.75

GC content: 67.92

Gene sequence:

>240_bases
GTGACCTACCCCCGCGCCAATCGCTTGCGCGGGCTGGTGGCCCGCATGCCGCTGCAGCACCTGTTGCTGGAAACCGACGC
GCCGGATCAGCCCGACGCCGGCATCCGCGGCCAACGCAACGAGCCGGCGTATCTGCGCACGGTATTGGACTGCATCGCCC
AGCTGCGCGGGCAAGATCCTGCGCACATTGCTGCGCAGACGTCGGCCAACGCACGCAACTTGTTCGGCCTACCGCACTGA

Upstream 100 bases:

>100_bases
TTCGATGCTCAGCTGCAGTTGGCCAAGCGCTTCGACCTGCCGCTGATCGTGCATGCACGCCGCGCCACCGAGGAGGTCAT
CGCGCGCATCAAGGCGGTAG

Downstream 100 bases:

>100_bases
GCGCAGCGTGCGCATTAGCGCGCGCGGTCAGCACGACAGCGCGCAGGCCGCATCACGACGCCGCAACCGCCTCGGCTGCC
GGCATCGCCACCGCAGCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MTYPRANRLRGLVARMPLQHLLLETDAPDQPDAGIRGQRNEPAYLRTVLDCIAQLRGQDPAHIAAQTSANARNLFGLPH

Sequences:

>Translated_79_residues
MTYPRANRLRGLVARMPLQHLLLETDAPDQPDAGIRGQRNEPAYLRTVLDCIAQLRGQDPAHIAAQTSANARNLFGLPH
>Mature_78_residues
TYPRANRLRGLVARMPLQHLLLETDAPDQPDAGIRGQRNEPAYLRTVLDCIAQLRGQDPAHIAAQTSANARNLFGLPH

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI87082439, Length=78, Percent_Identity=42.3076923076923, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 8754; Mature: 8623

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYPRANRLRGLVARMPLQHLLLETDAPDQPDAGIRGQRNEPAYLRTVLDCIAQLRGQDP
CCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
AHIAAQTSANARNLFGLPH
CCEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TYPRANRLRGLVARMPLQHLLLETDAPDQPDAGIRGQRNEPAYLRTVLDCIAQLRGQDP
CCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
AHIAAQTSANARNLFGLPH
CCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]