Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is fabZ
Identifier: 21242163
GI number: 21242163
Start: 1624658
End: 1625116
Strand: Reverse
Name: fabZ
Synonym: XAC1410
Alternate gene names: 21242163
Gene position: 1625116-1624658 (Counterclockwise)
Preceding gene: 21242164
Following gene: 21242162
Centisome position: 31.4
GC content: 60.35
Gene sequence:
>459_bases ATGAGCCACCACGTTTACGAACTGCCGATCGACGTCAGTCAGATCCAGACGCTGCTCCCGCACCGTTACCCGTTTCTGCT GGTCGACCGCATCCTCGAACTCGATCTTGAAACCAAGTGGATCGTGGCGCAGAAGAACGTCAGCATCAACGAGCCGTTCT TCCAGGGCCATTTTCCGAACCGTCCGGTCATGCCTGGCGTGCTGATCATCGAGGCGCTGGCGCAGGTCGGCGGCGTAATG ACCCAGCTCGGCCTGGGCCGCGATGCCTTGTCGCAGCTGTTCTATATGGTCAAGGTGGACAAGGCCCGCTTCAACAAGCA GGTGGTGCCGGGCGACGTGTTGATCATGGAAGTGCAGATGAAGCGCCTGATCCGCAACGTGGGATGCTTCTACGGCGAAG CCAAGGTCGATGGCGAAGTGGTGGCCAGTGCCGAGGTGATGTGCGCCGGCGCCAGGTAA
Upstream 100 bases:
>100_bases CCCCTCTCACCGACAATCGCACGTGGCGCAAAAACGCCGCGCGCTTCAAGCAGCTTGATGTGCTCGCTAGGCGCATCCTG GCTGTGGGCAAGGAGAAAGA
Downstream 100 bases:
>100_bases TCACCCGCTTTCGGAGTAAGACACGATGCGCGATTCAACACCTTTGATTCATCCGACGGCGGTCATCGATCCATCGGCAA CGCTGGCGGACGACGTGCGC
Product: (3R)-hydroxymyristoyl-ACP dehydratase
Products: NA
Alternate protein names: (3R)-hydroxymyristoyl ACP dehydrase
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MSHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPNRPVMPGVLIIEALAQVGGVM TQLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQMKRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR
Sequences:
>Translated_152_residues MSHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPNRPVMPGVLIIEALAQVGGVM TQLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQMKRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR >Mature_151_residues SHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPNRPVMPGVLIIEALAQVGGVMT QLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQMKRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR
Specific function: Involved in saturated fatty acids biosynthesis
COG id: COG0764
COG function: function code I; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioester dehydratase family. FabZ subfamily
Homologues:
Organism=Escherichia coli, GI1786377, Length=143, Percent_Identity=49.6503496503497, Blast_Score=152, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FABZ_XANAC (Q8PML6)
Other databases:
- EMBL: AE008923 - RefSeq: NP_641745.1 - ProteinModelPortal: Q8PML6 - SMR: Q8PML6 - GeneID: 1155481 - GenomeReviews: AE008923_GR - KEGG: xac:XAC1410 - HOGENOM: HBG433282 - OMA: KERRGVA - ProtClustDB: PRK00006 - BioCyc: XAXO190486:XAC1410-MONOMER - GO: GO:0005737 - HAMAP: MF_00406 - InterPro: IPR013114 - InterPro: IPR010084 - TIGRFAMs: TIGR01750
Pfam domain/function: PF07977 FabA
EC number: 4.2.1.-
Molecular weight: Translated: 17064; Mature: 16933
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: ACT_SITE 57-57
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPN CCCCEEECCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC RPVMPGVLIIEALAQVGGVMTQLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQM CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH KRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR HHHHHHHHHHCCCCCCCCCEEECEEEEEECCC >Mature Secondary Structure SHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPN CCCEEECCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC RPVMPGVLIIEALAQVGGVMTQLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQM CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH KRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR HHHHHHHHHHCCCCCCCCCEEECEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12024217