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The map label for this gene is glcD [H]

Identifier: 57238084

GI number: 57238084

Start: 1262412

End: 1263794

Strand: Reverse

Name: glcD [H]

Synonym: CJE1347

Alternate gene names: 57238084

Gene position: 1263794-1262412 (Counterclockwise)

Preceding gene: 57238085

Following gene: 57238083

Centisome position: 71.09

GC content: 33.77

Gene sequence:

>1383_bases
ATGAAAAAAGAATTTGAACAATATTTTAAACGATTTTTAGGAGAAGAAAACGCTTATTTTGATGAAATTCACAAAAGAGC
TTATAGCTATGATGCGACAAAAAAACATTATTTACCTGATGGGGTTCTTTTTCCAAGAAATGAAGAAGATATTGCTCAAA
TTTTAAAATTTTGCAATGAAAATAATATCATAGTCATACCTCGAGGCTCAGGATCTGGTTTTACAGGAGGAGCTTTAGCT
GTTAATGGCGGGGTGGTGCTTGCTTTTGAAAAGCATATGAATAAAATTTTAGAAATTGATCTTGAAAATTTAGTGGCTGT
TGTGCAACCTGGGGTTATTAATATACATTTACAAAAAGAAGTGGCTAAATATGGACTTTTTTACCCACCTGACCCTGCTA
GCATGGAGTATTCAAGCTTAGGGGGTAATGTAAGCGAAAATGCTGGGGGAATGAGAGCTGCAAAATATGGCATTACAAAA
GATTATGTGATGGCTTTAAGGGCTGTTTTGCCTAGCGGAGAAATCATTCGTGCAGGGAAACGCACTATTAAAGATGTAGC
AGGTTATAATTTGGCAGGAATTTTAATCGCTAGTGAAGGTTCTTTGGCAGTTTTAAGTGAGCTTACTTTAAAATTAATAC
CTTTGCCTAAATTTAAAAAAACTGCTTTTGCTATTTTTCCAAGTGTAAAAAGTGCTATGAATGCGGTTTACAAAAGTCTT
GCTAGCGGTGTAAGTCCTGTATCTATGGAATTTTTAGACAATCTTAGCATTAGAGCAGTTGAGAGCAAATTTAATAAAGG
TTTGCCTATAGAAGCTGGAGCTATTTTGATTGCTGATGTGGATGGTAATGTTAAAGAGGCTATTGATGAGGATTTAAGAA
ATTTAGAATATTATTTTTTAGAAGCTGGCGCTAGCGAATTTAAAATAGCAAAAGATGAACAAGAAACCGCAGATATTTGG
TTTGCTAGAAGAAATTGTTCTCAAAGCATTGCCATGTATGGAACTTTAAAACTTAATGAAGATATTACAGTTCCGCGTTC
TAAACTACCTACTTTACTTGAAGGTATAGATGAGATTTCTAAAAAATATGGTTTTAAAATTCCTTGTTTTGGACATACAG
GGGATGGAAATGTGCATACTAATGTTATGGTTCCTGATAAAAATGATAAAGAGCAGGTGAAAAAAGGCTATGAAGCTGTG
GAAGAGATTTTTAAATTAACAGTGAAACTTGGAGGAACTTTAAGCGGAGAGCATGGTATCGGACTCTCTAAGGCACCTTT
TATGAATTTAGCTTTTTCTGAAGCCGAAATGAATTTAATGAGAAATATTAAAAAAGCTTTTGATCCAAATAATATACTAA
ATCCTTTTAAAATGGGACTTTAG

Upstream 100 bases:

>100_bases
GTGGATATAAAAGTAATTTTTTTGATTTTAACTCTCAAGAAATAGGAAATTATTATAGGTATTATGATGCTTTGATTAAT
CTTCCTAAGGTGCAATAAAC

Downstream 100 bases:

>100_bases
AAGGTGAAAAATTTTTTTACTATTTTACTAAATTTGCGTGATAAGGAAATTTTAAATTATGCAGCAGCGCTTAGTTTTTA
TACTGTATTATCTTTAATAC

Product: glycolate oxidase, subunit GlcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLFPRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALA
VNGGVVLAFEKHMNKILEIDLENLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKFKKTAFAIFPSVKSAMNAVYKSL
ASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAILIADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIW
FARRNCSQSIAMYGTLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQVKKGYEAV
EEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPNNILNPFKMGL

Sequences:

>Translated_460_residues
MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLFPRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALA
VNGGVVLAFEKHMNKILEIDLENLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKFKKTAFAIFPSVKSAMNAVYKSL
ASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAILIADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIW
FARRNCSQSIAMYGTLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQVKKGYEAV
EEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPNNILNPFKMGL
>Mature_460_residues
MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLFPRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALA
VNGGVVLAFEKHMNKILEIDLENLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKFKKTAFAIFPSVKSAMNAVYKSL
ASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAILIADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIW
FARRNCSQSIAMYGTLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQVKKGYEAV
EEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPNNILNPFKMGL

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=469, Percent_Identity=30.7036247334755, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI37595754, Length=492, Percent_Identity=29.2682926829268, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI119964728, Length=422, Percent_Identity=25.1184834123223, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI4501993, Length=248, Percent_Identity=27.8225806451613, Blast_Score=121, Evalue=1e-27,
Organism=Escherichia coli, GI1789351, Length=416, Percent_Identity=37.0192307692308, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1787977, Length=532, Percent_Identity=26.6917293233083, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI48994907, Length=438, Percent_Identity=22.8310502283105, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI48994914, Length=123, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992373, Length=459, Percent_Identity=29.8474945533769, Blast_Score=212, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI71992381, Length=459, Percent_Identity=28.7581699346405, Blast_Score=189, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17534361, Length=463, Percent_Identity=28.2937365010799, Blast_Score=174, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI71992392, Length=363, Percent_Identity=30.5785123966942, Blast_Score=167, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI17556096, Length=456, Percent_Identity=25.6578947368421, Blast_Score=137, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6320027, Length=438, Percent_Identity=28.5388127853881, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6320023, Length=476, Percent_Identity=26.4705882352941, Blast_Score=169, Evalue=8e-43,
Organism=Saccharomyces cerevisiae, GI6320764, Length=485, Percent_Identity=27.2164948453608, Blast_Score=156, Evalue=6e-39,
Organism=Drosophila melanogaster, GI18921117, Length=428, Percent_Identity=27.5700934579439, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24639277, Length=428, Percent_Identity=27.5700934579439, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24639275, Length=428, Percent_Identity=27.5700934579439, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24653753, Length=230, Percent_Identity=28.2608695652174, Blast_Score=121, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50650; Mature: 50650

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLFPRNEEDIAQILKFCNE
CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
NNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLENLVAVVQPGVINIHLQKE
CCEEEEECCCCCCCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHH
VAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITKDYVMALRAVLPSGEIIRAGK
HHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEEHHHH
RTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKFKKTAFAIFPSVKSAMNAVYKSL
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAILIADVDGNVKEAIDEDLRNLEYYFL
HCCCCCEEHHHHHCCCCEEHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCEEEEE
EAGASEFKIAKDEQETADIWFARRNCSQSIAMYGTLKLNEDITVPRSKLPTLLEGIDEIS
ECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHCCHHHHHHHHHH
KKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQVKKGYEAVEEIFKLTVKLGGTLSGEHGI
HHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
GLSKAPFMNLAFSEAEMNLMRNIKKAFDPNNILNPFKMGL
CCCCCCCHHEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
>Mature Secondary Structure
MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLFPRNEEDIAQILKFCNE
CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
NNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLENLVAVVQPGVINIHLQKE
CCEEEEECCCCCCCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHH
VAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITKDYVMALRAVLPSGEIIRAGK
HHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEEHHHH
RTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKFKKTAFAIFPSVKSAMNAVYKSL
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAILIADVDGNVKEAIDEDLRNLEYYFL
HCCCCCEEHHHHHCCCCEEHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCEEEEE
EAGASEFKIAKDEQETADIWFARRNCSQSIAMYGTLKLNEDITVPRSKLPTLLEGIDEIS
ECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHCCHHHHHHHHHH
KKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQVKKGYEAVEEIFKLTVKLGGTLSGEHGI
HHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
GLSKAPFMNLAFSEAEMNLMRNIKKAFDPNNILNPFKMGL
CCCCCCCHHEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]