Click here to switch to the map view.

The map label for this gene is apl [H]

Identifier: 57238040

GI number: 57238040

Start: 1218412

End: 1219050

Strand: Reverse

Name: apl [H]

Synonym: CJE1302

Alternate gene names: 57238040

Gene position: 1219050-1218412 (Counterclockwise)

Preceding gene: 57238041

Following gene: 57238038

Centisome position: 68.57

GC content: 29.73

Gene sequence:

>639_bases
ATGCAAGAAATCATTTCTTTTATTGTTGAGACAGCTAGTGCTTGGGGGTATTTGGGTATTATTATCTTAATGACCTTAGA
GAGTTGTTTTATACCTTTTCCAAGTGAAGTTGTTATGATACCTGCTGGATATTTGGCACATAAAGGCGAACTTGATATCA
CTCTTTGTATACTTAGTGGGACTTTAGGTTCTGTTTTAGGGGCTTTGATTAATTATTATATTTGCTTTTTTTGGGGTAAA
AATTTTGTATTAAAATGGGGTAAGTATTTTGGTATAAACGAAGTCAAATTTGCTAAATTTGAAGAATTTTTTAACAAACA
TGGGGAATTTTCAACCTTTACTTGTCGTCTTTTGCCAGGGATTCGTCAGTATATTTCTATGCCTGCAGGTTTGGTAAAAA
TGAAACTTGTAAATTTTATACTTTTTACTGCACTTGGTAGTGCTATTTGGGTGGCTATACTTGTATTTTTGGGTTATTAT
ATAGGACAAAATGAAGAGTTGATTAAAACTTATTTAACTCAAATTTTAATCATTATAATTGTTTTTGTGATTTTAGCAAG
TTTAATTTATATATCAAAATCAAAAAGCCTTTTAAAAAGGCTTAAATTTTATCTTTTACGCTTTGTATGGCGTTTTTGA

Upstream 100 bases:

>100_bases
TTTCAGTTGCAGGTAAATAAAAAAAGCGGTATAAAACCGCTTTTTACTGTTTAATCTTTTAAGCTACAATTTTTTAAAAT
TTTCTTCAAATAAGGCTAAT

Downstream 100 bases:

>100_bases
TTTGTTGTTTTGAATTTTCTAATTTTATTTTTTCTTTTTCATTGAATTTTAATTCAAAAACCTTTTCTATACCATCTTTT
CCTATGATAGCGGGCATTGA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGYLAHKGELDITLCILSGTLGSVLGALINYYICFFWGK
NFVLKWGKYFGINEVKFAKFEEFFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
IGQNEELIKTYLTQILIIIIVFVILASLIYISKSKSLLKRLKFYLLRFVWRF

Sequences:

>Translated_212_residues
MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGYLAHKGELDITLCILSGTLGSVLGALINYYICFFWGK
NFVLKWGKYFGINEVKFAKFEEFFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
IGQNEELIKTYLTQILIIIIVFVILASLIYISKSKSLLKRLKFYLLRFVWRF
>Mature_212_residues
MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGYLAHKGELDITLCILSGTLGSVLGALINYYICFFWGK
NFVLKWGKYFGINEVKFAKFEEFFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
IGQNEELIKTYLTQILIIIIVFVILASLIYISKSKSLLKRLKFYLLRFVWRF

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24300; Mature: 24300

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGYLAHKGELDITLCILSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCEEEEHHHHC
TLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEEFFNKHGEFSTFTCRLLPG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
IRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYYIGQNEELIKTYLTQILIIII
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VFVILASLIYISKSKSLLKRLKFYLLRFVWRF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGYLAHKGELDITLCILSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCEEEEHHHHC
TLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEEFFNKHGEFSTFTCRLLPG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
IRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYYIGQNEELIKTYLTQILIIII
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VFVILASLIYISKSKSLLKRLKFYLLRFVWRF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]