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The map label for this gene is secD [H]

Identifier: 57237975

GI number: 57237975

Start: 1152585

End: 1154165

Strand: Reverse

Name: secD [H]

Synonym: CJE1236

Alternate gene names: 57237975

Gene position: 1154165-1152585 (Counterclockwise)

Preceding gene: 57237976

Following gene: 57237974

Centisome position: 64.92

GC content: 34.28

Gene sequence:

>1581_bases
ATGCGTAATTCTAAAATCAATTATCGCTTGATTATTTTTATGGCGGTATTTATTTTTGGAGTGGCTTTTTCACTCCCTTC
TTTTTTGCAGTCAGAACGTGGTGCGAAGATTAATTTAGGGCTTGATTTGCAAGGTGGGCTTTATATGCTCTTAGGTGTAG
ATAATGAAGAAGCTGTAAAATCTAAAATAAAATCAATTGCATCTTCATTGAGTTATTCTTTTAATAAAGAAAATATTTTA
AATGATGGCTTAAATATCCATGATGATATTTTAGAATTTACTTTGCTTGATAATGCAGATATTGCAAAAGTCGAAAATTT
GCTTAAAGAAATAAAAGGAATTAATATACAAAGTGAAAATATGCACTATAAAATTTCTTTTACCTCAGAAGAAGTAAAAA
ATATAGAAAATTTTGCACTTTTGCAAGCAGTTGAAACCATAAGAAATAGGCTTGATCAATTTGGTTTAGCAGAGCCAACA
GTTGCTAAACAAGGTGATGATAAGATTTTGGTTGAACTTGCAGGGATTAAAACCAAAGAAGATGAACTAAGAGCAAAAGA
ACGCATCACAAAAGCAGCACATTTGCAACTTATGGAAGTTGATGATTCTAAAATGGGTCAAGCTTCTACAATGAGCGATG
CTGAGGCTGCGAGTTATGGACTGATTTTAGTGCCTGATTCTAGAAATCCAAATTTAAAATATACCTTAAAAAGTATACCT
ATTTTAGATGGATCTATGCTTACTGATGCTAGAGTAGGGATTAGTGATAAGAGTAATTATCCTGTGATTAATTTTACTTT
AAATGCCGAGGGTTCTAAAAAATTTGCTGATTATACAGGAGCAAATGTTGGAAAGCGTCTTGCTATTGTACTTGATAATA
AAGTATATTCTGCTCCATCTATCAATGAACGCATAGGTGGAGGTAGTGGGCAAATCAGTGGAGCTTTTACTCAAGAAGAA
GCACGCGATGTGGCGGTAGCTTTAAGAAGTGGAGCTTTGCTTGCGCCTGTAAAATTACTTGAACAAAGAAGCATAGGACC
ATCTTTAGGTGCTGATAGTATTAAAATGAGTATGATAGCCTTAATCGGTGCATCGGTTTTTATTGTAGTATTTATGATGA
TGTATTACGGTGTGGCAGGAATTTTTGCAAATATTGCAATGCTAGTTAATGTTTTGGTAGTAGTTGCCGTTATGGCTATG
TTTGGAGCAACTTTAACTTTACCAGGGATGGCAGGACTTGTTTTAACTGTGGGTATGGCAGTAGATGCAAATGTGATTAT
CAATGAGCGCATACGAGAACTCTTGCGAGATGGAGTAAATATAAGAGCTAGCATAGAACAAGGTTATAAAAATGCTATGA
GTGCGATTATAGATTCAAATATCACTTCTTTGGTTACTTCGGTAGCACTTTATGCTTATGGAACAGGAGCAGTTAAAGGT
TTTGCTGTGACTTTGGGAATTGGTATCGTTGTTTCTATGATTACAGCTATTTTGGGAACTCATGGAATGTTTGATTATTT
TATGCAACGCATAGAAAAAAGTAATAATACAAGATTTTGGTTTGGCTATAGGAGAAGATAA

Upstream 100 bases:

>100_bases
TGTGAAGTCGTAAAACCAGAGGAGGATTTTATCAAAGTTAAGCTTAATGAAGACAATGTTACTGCAAAAATTTCAAGAGA
ATTTATAGCAAAGAAAATTG

Downstream 100 bases:

>100_bases
TGCAGTTTTTTAGCGAAAAGAAAATTTATGATTTTATGAGAATGCGTTTTGCTGCTATTTCTCTTTCTTTTATTTTGTTT
TTTGGTTCTATTTATTTGCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSERGAKINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENIL
NDGLNIHDDILEFTLLDNADIAKVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASYGLILVPDSRNPNLKYTLKSIP
ILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEE
ARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAM
FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG
FAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTRFWFGYRRR

Sequences:

>Translated_526_residues
MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSERGAKINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENIL
NDGLNIHDDILEFTLLDNADIAKVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASYGLILVPDSRNPNLKYTLKSIP
ILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEE
ARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAM
FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG
FAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTRFWFGYRRR
>Mature_526_residues
MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSERGAKINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENIL
NDGLNIHDDILEFTLLDNADIAKVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASYGLILVPDSRNPNLKYTLKSIP
ILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEE
ARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAM
FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG
FAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTRFWFGYRRR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=544, Percent_Identity=33.4558823529412, Blast_Score=270, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57228; Mature: 57228

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSERGAKINLGLDLQGGLYMLLGVDNEEAVK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCHHHHH
SKIKSIASSLSYSFNKENILNDGLNIHDDILEFTLLDNADIAKVENLLKEIKGINIQSEN
HHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHCCCEECCC
MHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPTVAKQGDDKILVELAGIKTKE
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCH
DELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASYGLILVPDSRNPNLKYTLKSIP
HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHCCCEEEEECCCCCCEEEEEEECC
ILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPS
EECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEEEEECCEECCCC
INERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIA
CHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
VDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG
CCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHH
FAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTRFWFGYRRR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCC
>Mature Secondary Structure
MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSERGAKINLGLDLQGGLYMLLGVDNEEAVK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCHHHHH
SKIKSIASSLSYSFNKENILNDGLNIHDDILEFTLLDNADIAKVENLLKEIKGINIQSEN
HHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHCCCEECCC
MHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPTVAKQGDDKILVELAGIKTKE
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCH
DELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASYGLILVPDSRNPNLKYTLKSIP
HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHCCCEEEEECCCCCCEEEEEEECC
ILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPS
EECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEEEEECCEECCCC
INERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIA
CHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
VDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG
CCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHH
FAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTRFWFGYRRR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]