Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 57237688

GI number: 57237688

Start: 872285

End: 873085

Strand: Direct

Name: psd [H]

Synonym: CJE0934

Alternate gene names: 57237688

Gene position: 872285-873085 (Clockwise)

Preceding gene: 57237687

Following gene: 57237696

Centisome position: 49.06

GC content: 28.96

Gene sequence:

>801_bases
ATGAGTTTTTCAAAAGAAAGTTCGAGACTTTTTGGTTTTGTAGCGGGGATTAAATTTCCTAAAATGATACAAAAAGTTAT
TAATGAAAATTATGTTAAGTATTTTAATATCGATATGAGTGAATTTAAAAGCTCTTGTGAATACGAGAGTTTAAATGCTC
TTTTTACAAGAACTTTGCAAATTCCAAGAAAGCTTGAAGAAGGTTTTATCAGTCCAAGTGATGGTAAAATTTTAGAGTGT
GGAAGTACTTTTTTGGCAAATGAAGAACATTTTGCTTTTTCTATAAAAGGACATACTTATAGCATTGAGGAGCTTTTAAA
AGATAGCTTTGAAAAAGATGAGCTTAAAAATGGGCTTGATTATGTCAATATTTATCTTTCTCCAAAAGATTATCATCGTT
ATCACAGCCCTTGTGATATGCAAATTTTAAGTGCAACTTACACAAGTGGAGTGCTTTATAGCGTAAATGAAAAACATTTA
GAACGCATTAGTAATTTATATGTAAAAAATGAAAGAGTGAGCTTGAAATGTCAAAATGAAAAAGGTATTTTTTGGCTTGT
TTTTGTAGGAGCGCAAAATGTAGGAAAAATGCGTTTTAATTTTGATGCAAGCATACAAACCAATGCTAAAATTTCTCATA
ATTTTACTAGAAAATATGAAAATTTAAATTTCAAAAAAGGCGAAGAACTAGGAAATTTTGAGCTAGGTTCTACTATAGTT
TTAATCTCTCAAAAAGGACTTTTAACTTTTAATTTAAAAGTAGGGCAGGGTATTAAATTTGGAGAAAAAATAGCGGATTA
G

Upstream 100 bases:

>100_bases
AAACTAAGCTTTATGTGAGTAGTGGAGCAGGATTTTGGGGGCCAAGTCTTAGAGTTTTTGCTCCGAGTGAAATAGTGATT
TTAAATTTAAAAGGAAAAAA

Downstream 100 bases:

>100_bases
TTTTTAGGAGTTTTATTTGCCATTTGATAGATAAAGGCAAAAACTTCAGCTACAGCTTTATACATATTAGGTGGAATTTC
ATCACCTAAGTCAAGCTTGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKSSCEYESLNALFTRTLQIPRKLEEGFISPSDGKILEC
GSTFLANEEHFAFSIKGHTYSIEELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRKYENLNFKKGEELGNFELGSTIV
LISQKGLLTFNLKVGQGIKFGEKIAD

Sequences:

>Translated_266_residues
MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKSSCEYESLNALFTRTLQIPRKLEEGFISPSDGKILEC
GSTFLANEEHFAFSIKGHTYSIEELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRKYENLNFKKGEELGNFELGSTIV
LISQKGLLTFNLKVGQGIKFGEKIAD
>Mature_265_residues
SFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKSSCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECG
STFLANEEHFAFSIKGHTYSIEELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHLE
RISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRKYENLNFKKGEELGNFELGSTIVL
ISQKGLLTFNLKVGQGIKFGEKIAD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=296, Percent_Identity=32.4324324324324, Blast_Score=132, Evalue=4e-31,
Organism=Escherichia coli, GI1790604, Length=245, Percent_Identity=33.0612244897959, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71980843, Length=277, Percent_Identity=31.4079422382672, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI71980840, Length=275, Percent_Identity=30.9090909090909, Blast_Score=113, Evalue=9e-26,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=37.2670807453416, Blast_Score=98, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6321609, Length=222, Percent_Identity=27.4774774774775, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649526, Length=297, Percent_Identity=29.96632996633, Blast_Score=118, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24649528, Length=297, Percent_Identity=29.96632996633, Blast_Score=118, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24649524, Length=297, Percent_Identity=29.96632996633, Blast_Score=118, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30533; Mature: 30402

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKSSCEYESLNALFTRTLQ
CCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHH
IPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSIEELLKDSFEKDELKNGLD
HHHHHHHCCCCCCCCCEEECCCHHCCCCCEEEEEECCCEEEHHHHHHCCCCHHHHHCCCE
YVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHLERISNLYVKNERVSLKCQNE
EEEEEECCHHHHHCCCCCCEEEEEEHHCCCEEEECCHHHHHHHHHHEEECCEEEEEECCC
KGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRKYENLNFKKGEELGNFELGSTIV
CCEEEEEEECCCCCCEEEEEECCCEEECCEECCHHHHHHCCCCCCCCCCCCCEECCCEEE
LISQKGLLTFNLKVGQGIKFGEKIAD
EEECCCEEEEEEEECCCCCCHHHHCC
>Mature Secondary Structure 
SFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKSSCEYESLNALFTRTLQ
CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHH
IPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSIEELLKDSFEKDELKNGLD
HHHHHHHCCCCCCCCCEEECCCHHCCCCCEEEEEECCCEEEHHHHHHCCCCHHHHHCCCE
YVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHLERISNLYVKNERVSLKCQNE
EEEEEECCHHHHHCCCCCCEEEEEEHHCCCEEEECCHHHHHHHHHHEEECCEEEEEECCC
KGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRKYENLNFKKGEELGNFELGSTIV
CCEEEEEEECCCCCCEEEEEECCCEEECCEECCHHHHHHCCCCCCCCCCCCCEECCCEEE
LISQKGLLTFNLKVGQGIKFGEKIAD
EEECCCEEEEEEEECCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]