Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 57237014

GI number: 57237014

Start: 746394

End: 746933

Strand: Direct

Name: rimM [H]

Synonym: CJE0812

Alternate gene names: 57237014

Gene position: 746394-746933 (Clockwise)

Preceding gene: 57237013

Following gene: 57237015

Centisome position: 41.98

GC content: 25.56

Gene sequence:

>540_bases
TTGAGTGAAAAAGATTTTGTTCAAGTTGCAAAACTTGGTAAAACTGTGGGTCTTAAGGGTTATGTAAAATTGCATAACCT
GAGCGACTTTTCTTCTCAATTTAAAAAAGATGCTACTTTTTTTATAAAAAACACCAAAGAAATGTTAAAGATTAAGCATT
ATAATGCAAACAATTCTACTGTTTTATTTGAAAATTATGAAGATATAGAAAAGGCCAAAGAATTAACTAATCTTATTCTT
TTTCAGAGTATCGAGAAAAGCAGACAAACTTGTAAATTAAAAAAAGATGAGTTTTTTTATTTTGATATTTTAGAGTGTGA
AGTTTTTGAAGAAGATAAAAGATTAGGTAAAGTGGTTGATATCTTGGAAACTGGAGCTTCTTATTTATTTGAAATTCAAA
GTGATGAAAAATGGGTTGAAAAAAAATATCCTAAAATATTTTTTATTCCATATTTGGGTAAATTTGTTAAAAATATAGAT
ATAGAAAAACGACAGATTTTTTGCACGCAAGATGCTTTTTTAATTTTAGAAAATTCATGA

Upstream 100 bases:

>100_bases
CTTATAGGTAAAAATGGAAAAATGATCAATGCTATAAAAACTGTAATCTCTGCTTATAAGAGCAAGGATGCAAGTTCTTA
TAGAGTAACGGTAAAAGCGC

Downstream 100 bases:

>100_bases
AATTTAGTTTCGTTTCTTTGTTCCCTAATCTTATGGAATTTTACTTCCAAGATTCTATACTTGCAAGAGCAAAAGAAAAA
AAACTTTTCAAACTTAATTT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLIL
FQSIEKSRQTCKLKKDEFFYFDILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNID
IEKRQIFCTQDAFLILENS

Sequences:

>Translated_179_residues
MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLIL
FQSIEKSRQTCKLKKDEFFYFDILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNID
IEKRQIFCTQDAFLILENS
>Mature_178_residues
SEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILF
QSIEKSRQTCKLKKDEFFYFDILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNIDI
EKRQIFCTQDAFLILENS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 21152; Mature: 21020

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNST
CCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCEEEEECCHHHEEEEEECCCCCE
VLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEEDKRLGKVVD
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHH
ILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNIDIEKRQIFCTQDAFLILENS
HHHCCCCEEEEECCCHHHHHHCCCEEEEHHHHHHHHHCCCCCHHEEEEECCEEEEEECC
>Mature Secondary Structure 
SEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNST
CCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCEEEEECCHHHEEEEEECCCCCE
VLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEEDKRLGKVVD
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHH
ILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNIDIEKRQIFCTQDAFLILENS
HHHCCCCEEEEECCCHHHHHHCCCEEEEHHHHHHHHHCCCCCHHEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA