Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226693
Identifier: 21226693
GI number: 21226693
Start: 722397
End: 723254
Strand: Direct
Name: 21226693
Synonym: MM_0591
Alternate gene names: NA
Gene position: 722397-723254 (Clockwise)
Preceding gene: 21226689
Following gene: 21226694
Centisome position: 17.64
GC content: 44.64
Gene sequence:
>858_bases ATGAGTTTTTTAATGGAAAAAATTTCACAATTTATCAATACCTATTATCTTGACCCCATAAAGGGCGATGAGGGGTATAA CATTGTAAACACATTTACCTGGGCAGTGGTACTGGGTATCTGTATTTTCGGGGTTTTCAGGCTTCTTGAAAAGATGGAAG TGAAGATAACCCCAAAGTTCATTCTCTCGCTCCTGCCATTCGTGCTTGCGGGCTCCTCCCTGCGTGTGCTCGAAGACTCG CCTGCTAACATCTTTCACCCCCCTTTCAGCTATTTGCTTATAACTCCGAACATTTATTTCCTGGTCTTCGGAATAACAGT GATCTGCCTGTGGCTCTCAATAAGGCTGCAGAAGGCGGGGCTTGTAAAGGATTATCATCCTGCCTTTGCAGGCTTCGGGC TGGCATGGTTTTTATTGAACCTCGGAGCCCTGCTGTATTTTGAGGACATTGTAGTCCCTTACGTTCCGGTTTTTGTGCTT GGGGCAGGTACAGGGCTAACATTTGTCTTTTATCTGGTTGCCCGACACTTAAAATCCGCGATTTTCACTGATCCCCTGAA CCTTTCCATCCTTCTTGCCCATATGCTGGATGCTTCTTCGACATATATAGGGATAGATAAACTCGGGTATTTCGAAAAAC ACGTGCTCCCCTCATATCTTATTAAACTTACGGATACTGCACTGGTTATGTATCCATTGAAGATAATTATCTTCGTAGGG GTTCTTTACGCACTTGATACCCAGTTCGAGAAAGATGATGAGTCAACCAACCTGAAAATGCTGATTAAAATGGTCATCCT GATCCTCGGGCTTTCTCCGGCAACCCGGAATACAATCCGGATGATGCTTGGCATCTGA
Upstream 100 bases:
>100_bases AATGCAGTAAACATATTCAGCTATATACTGTGAGTATTTATTCAGCTATACTGTGAGTATTAATTGTATCAGGTCATTGC CATTTTAAATGAGTGATAAG
Downstream 100 bases:
>100_bases AAAGTCAGGAAACAGGTGCCTCGCTGATACCGGGGTTCAATGTGTCAGGTTTTATTGGGGATAAACATGGAAAGAGAAGA AGAATATTCACGGGAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSFLMEKISQFINTYYLDPIKGDEGYNIVNTFTWAVVLGICIFGVFRLLEKMEVKITPKFILSLLPFVLAGSSLRVLEDS PANIFHPPFSYLLITPNIYFLVFGITVICLWLSIRLQKAGLVKDYHPAFAGFGLAWFLLNLGALLYFEDIVVPYVPVFVL GAGTGLTFVFYLVARHLKSAIFTDPLNLSILLAHMLDASSTYIGIDKLGYFEKHVLPSYLIKLTDTALVMYPLKIIIFVG VLYALDTQFEKDDESTNLKMLIKMVILILGLSPATRNTIRMMLGI
Sequences:
>Translated_285_residues MSFLMEKISQFINTYYLDPIKGDEGYNIVNTFTWAVVLGICIFGVFRLLEKMEVKITPKFILSLLPFVLAGSSLRVLEDS PANIFHPPFSYLLITPNIYFLVFGITVICLWLSIRLQKAGLVKDYHPAFAGFGLAWFLLNLGALLYFEDIVVPYVPVFVL GAGTGLTFVFYLVARHLKSAIFTDPLNLSILLAHMLDASSTYIGIDKLGYFEKHVLPSYLIKLTDTALVMYPLKIIIFVG VLYALDTQFEKDDESTNLKMLIKMVILILGLSPATRNTIRMMLGI >Mature_284_residues SFLMEKISQFINTYYLDPIKGDEGYNIVNTFTWAVVLGICIFGVFRLLEKMEVKITPKFILSLLPFVLAGSSLRVLEDSP ANIFHPPFSYLLITPNIYFLVFGITVICLWLSIRLQKAGLVKDYHPAFAGFGLAWFLLNLGALLYFEDIVVPYVPVFVLG AGTGLTFVFYLVARHLKSAIFTDPLNLSILLAHMLDASSTYIGIDKLGYFEKHVLPSYLIKLTDTALVMYPLKIIIFVGV LYALDTQFEKDDESTNLKMLIKMVILILGLSPATRNTIRMMLGI
Specific function: Unknown
COG id: COG1967
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002749 [H]
Pfam domain/function: PF01889 DUF63 [H]
EC number: NA
Molecular weight: Translated: 32102; Mature: 31971
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFLMEKISQFINTYYLDPIKGDEGYNIVNTFTWAVVLGICIFGVFRLLEKMEVKITPKF CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH ILSLLPFVLAGSSLRVLEDSPANIFHPPFSYLLITPNIYFLVFGITVICLWLSIRLQKAG HHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC LVKDYHPAFAGFGLAWFLLNLGALLYFEDIVVPYVPVFVLGAGTGLTFVFYLVARHLKSA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH IFTDPLNLSILLAHMLDASSTYIGIDKLGYFEKHVLPSYLIKLTDTALVMYPLKIIIFVG HHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLYALDTQFEKDDESTNLKMLIKMVILILGLSPATRNTIRMMLGI HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC >Mature Secondary Structure SFLMEKISQFINTYYLDPIKGDEGYNIVNTFTWAVVLGICIFGVFRLLEKMEVKITPKF CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH ILSLLPFVLAGSSLRVLEDSPANIFHPPFSYLLITPNIYFLVFGITVICLWLSIRLQKAG HHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC LVKDYHPAFAGFGLAWFLLNLGALLYFEDIVVPYVPVFVLGAGTGLTFVFYLVARHLKSA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH IFTDPLNLSILLAHMLDASSTYIGIDKLGYFEKHVLPSYLIKLTDTALVMYPLKIIIFVG HHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLYALDTQFEKDDESTNLKMLIKMVILILGLSPATRNTIRMMLGI HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]