| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226644
Identifier: 21226644
GI number: 21226644
Start: 670830
End: 671420
Strand: Direct
Name: 21226644
Synonym: MM_0542
Alternate gene names: NA
Gene position: 670830-671420 (Clockwise)
Preceding gene: 21226641
Following gene: 21226646
Centisome position: 16.38
GC content: 63.11
Gene sequence:
>591_bases TTGTCATCAGGTGTCAGAGAGGGACTAGGATCCGGGGTGGGAGTTGGTATAGGGGTTGGCGTGGGGGTTGGCGTGGGGGT TGGTGTAGGGGTTGGTGTAGGAGTTGGTGTAGGAGTTGGTGTAGGAGTTGGTGTAGGAGTTGGTGTAGGGGTTGGTTCGG GAGTTGGTGTAGGGGTTGGTTCGGGAGTGGGAGTGGGCTCAGGACCCGGAGTGGGAGTAGGTTCAGGGTCCGGAGTAGGA GTGGGTTCAGGGTCCGGAGTAGGAGTGGGCTCGGGATCCGGAGTAGGGGTCGGCTCGGGAGTAGGCTCGGGATCCGGAGT GGGCTCAGGATCCGGAGTAGGGGTCGGCTCGGGAGTAGGCTCGGGATCCGGAGTGGGGGTCGGCTCAGGCGTGGGTTCAG GAGCCGGAGTGGGCTCGGGATCCGGGGTGGGAGCCGGCTCAGGGTCTGGAGCGGGGTCTTGCTCAGGAGCCGGTTCGGGA TCTGGTTCGAGAGTCGGCTCAGGATCTGTCTCGGGCGCAGGTTCTGAAGAAGGTTCAGGAGCAGGCGCGGTGTCATCATC TGAAACCGCCAGAGGCCCGTTATCAGCATAA
Upstream 100 bases:
>100_bases CGGAGAGACGCCGCCTCCGCCTCCACCGCTGCTACCTCCGCTGCTTCCACCACTACTACCTCCACTACTACCTCCACTGC TACCACCACTGCTGCTTTTA
Downstream 100 bases:
>100_bases AAAGCTGCAGCAACCGCACCGACGGCAATAACCTGAAGTGCAATGGCTACTGTAAATAAAATGGAGAATATTCTTTTTGC AGTCAGAATAACACCCCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MSSGVREGLGSGVGVGIGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGSGVGVGVGSGVGVGSGPGVGVGSGSGVG VGSGSGVGVGSGSGVGVGSGVGSGSGVGSGSGVGVGSGVGSGSGVGVGSGVGSGAGVGSGSGVGAGSGSGAGSCSGAGSG SGSRVGSGSVSGAGSEEGSGAGAVSSSETARGPLSA
Sequences:
>Translated_196_residues MSSGVREGLGSGVGVGIGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGSGVGVGVGSGVGVGSGPGVGVGSGSGVG VGSGSGVGVGSGSGVGVGSGVGSGSGVGSGSGVGVGSGVGSGSGVGVGSGVGSGAGVGSGSGVGAGSGSGAGSCSGAGSG SGSRVGSGSVSGAGSEEGSGAGAVSSSETARGPLSA >Mature_195_residues SSGVREGLGSGVGVGIGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGSGVGVGVGSGVGVGSGPGVGVGSGSGVGV GSGSGVGVGSGSGVGVGSGVGSGSGVGSGSGVGVGSGVGSGSGVGVGSGVGSGAGVGSGSGVGAGSGSGAGSCSGAGSGS GSRVGSGSVSGAGSEEGSGAGAVSSSETARGPLSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15462; Mature: 15331
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00101 HEXAPEP_TRANSFERASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSGVREGLGSGVGVGIGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGSGVGVGVG CCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGVGVGSGPGVGVGSGSGVGVGSGSGVGVGSGSGVGVGSGVGSGSGVGSGSGVGVGSGVG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGSGVGVGSGVGSGAGVGSGSGVGAGSGSGAGSCSGAGSGSGSRVGSGSVSGAGSEEGSG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AGAVSSSETARGPLSA CCCCCCCCCCCCCCCC >Mature Secondary Structure SSGVREGLGSGVGVGIGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGSGVGVGVG CCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGVGVGSGPGVGVGSGSGVGVGSGSGVGVGSGSGVGVGSGVGSGSGVGSGSGVGVGSGVG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGSGVGVGSGVGSGAGVGSGSGVGAGSGSGAGSCSGAGSGSGSRVGSGSVSGAGSEEGSG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AGAVSSSETARGPLSA CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA