| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226605
Identifier: 21226605
GI number: 21226605
Start: 624322
End: 625134
Strand: Direct
Name: 21226605
Synonym: MM_0503
Alternate gene names: NA
Gene position: 624322-625134 (Clockwise)
Preceding gene: 21226604
Following gene: 21226606
Centisome position: 15.24
GC content: 43.17
Gene sequence:
>813_bases ATGAGCAGCGATGTATCATCGGAGAAGTCTCCTTTAACCTTCTTTGTATTAATTTTCGCTCTTTCAATTCCGTTTCTGTT GTTTGGCGGAAGGCCACTGCCTCTCCCGATAAATCTTCCTGTGAGTTCTTTTATGTTAGTTTGCCCGCTCATAGCAGCTT CGATACTTGTTTATAAAGAAAGCAAATTTGAAGGAATAAAGGAGCTATTGAAAAAGACTCTCAATTATAGAAAAATAAAT CCAAAGATCTGGTACCTGCCTATCTTTTTGTTGATGCCAGCCATTATGCTGCTATCTTATCTGGTAATGCGTTTTATGGG AAAGCCGCTTCCCGAGCCTCACATTCCTGTTCTGGCGATTCCTCTGTTTTTTGTCATGTTCTTTATTGCTGCTGTATTTG AAGAAGCAGGCTGGATGGGATATGCAGCTGACCCCATGCAGCATCGCTGGGGTGCATCAGGAGCTGGAATTCTCATGGGG TCGATATGGGGGATGTGGCATCTTGCGGGATGGCATTTTCAAACTCACCATACTGCGACATGGACTGCAGGACAATTTAT CTCTACAGTAGCACTTCGAATCATTATTTTCTGGCTCTATAACAATACTGGAAAAAGTGTATTTGCAGCAGTTCTCTTTC ACGACATGATGAATGTCAGCGAGTTTCTGTTTCCAAATTATGGTTCACATTATGACCCGGTTATTACCGGAGTGATCACT GCAATTTTAGCTGCGGTAGTGACGTTCCTGTGGGGTCCCAGGACATTAGCCAGGTTCAGATATTCCGGGCAAAACATAAG GCTGCCATACTAA
Upstream 100 bases:
>100_bases ACTCTCCTCAAAGATGTTTAGACATATCTGAAGAGCAGAAAAAAAGAGCAGAAAAAACCATTTTCGACATGGGAGAAATA AACATCAGGGGTCACAGGAC
Downstream 100 bases:
>100_bases CATTAGCAGGGAAAATAAATAGCTATTTTATAACATAATGTTTATAAAAACATAGAGTAAAAACCAAGCCTGGAAAAATT CTGCAGAATCTTAACAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: CAAX Amino Terminal Protease Family; Caax Amino Terminal Protease; CAAX Amino Terminal Protease Family Protein
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MSSDVSSEKSPLTFFVLIFALSIPFLLFGGRPLPLPINLPVSSFMLVCPLIAASILVYKESKFEGIKELLKKTLNYRKIN PKIWYLPIFLLMPAIMLLSYLVMRFMGKPLPEPHIPVLAIPLFFVMFFIAAVFEEAGWMGYAADPMQHRWGASGAGILMG SIWGMWHLAGWHFQTHHTATWTAGQFISTVALRIIIFWLYNNTGKSVFAAVLFHDMMNVSEFLFPNYGSHYDPVITGVIT AILAAVVTFLWGPRTLARFRYSGQNIRLPY
Sequences:
>Translated_270_residues MSSDVSSEKSPLTFFVLIFALSIPFLLFGGRPLPLPINLPVSSFMLVCPLIAASILVYKESKFEGIKELLKKTLNYRKIN PKIWYLPIFLLMPAIMLLSYLVMRFMGKPLPEPHIPVLAIPLFFVMFFIAAVFEEAGWMGYAADPMQHRWGASGAGILMG SIWGMWHLAGWHFQTHHTATWTAGQFISTVALRIIIFWLYNNTGKSVFAAVLFHDMMNVSEFLFPNYGSHYDPVITGVIT AILAAVVTFLWGPRTLARFRYSGQNIRLPY >Mature_269_residues SSDVSSEKSPLTFFVLIFALSIPFLLFGGRPLPLPINLPVSSFMLVCPLIAASILVYKESKFEGIKELLKKTLNYRKINP KIWYLPIFLLMPAIMLLSYLVMRFMGKPLPEPHIPVLAIPLFFVMFFIAAVFEEAGWMGYAADPMQHRWGASGAGILMGS IWGMWHLAGWHFQTHHTATWTAGQFISTVALRIIIFWLYNNTGKSVFAAVLFHDMMNVSEFLFPNYGSHYDPVITGVITA ILAAVVTFLWGPRTLARFRYSGQNIRLPY
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30559; Mature: 30428
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDVSSEKSPLTFFVLIFALSIPFLLFGGRPLPLPINLPVSSFMLVCPLIAASILVYKE CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH SKFEGIKELLKKTLNYRKINPKIWYLPIFLLMPAIMLLSYLVMRFMGKPLPEPHIPVLAI HHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH PLFFVMFFIAAVFEEAGWMGYAADPMQHRWGASGAGILMGSIWGMWHLAGWHFQTHHTAT HHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCC WTAGQFISTVALRIIIFWLYNNTGKSVFAAVLFHDMMNVSEFLFPNYGSHYDPVITGVIT HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH AILAAVVTFLWGPRTLARFRYSGQNIRLPY HHHHHHHHHHCCHHHHHHHHCCCCEEECCC >Mature Secondary Structure SSDVSSEKSPLTFFVLIFALSIPFLLFGGRPLPLPINLPVSSFMLVCPLIAASILVYKE CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH SKFEGIKELLKKTLNYRKINPKIWYLPIFLLMPAIMLLSYLVMRFMGKPLPEPHIPVLAI HHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH PLFFVMFFIAAVFEEAGWMGYAADPMQHRWGASGAGILMGSIWGMWHLAGWHFQTHHTAT HHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCC WTAGQFISTVALRIIIFWLYNNTGKSVFAAVLFHDMMNVSEFLFPNYGSHYDPVITGVIT HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH AILAAVVTFLWGPRTLARFRYSGQNIRLPY HHHHHHHHHHCCHHHHHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA