| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226476
Identifier: 21226476
GI number: 21226476
Start: 478678
End: 480555
Strand: Direct
Name: 21226476
Synonym: MM_0374
Alternate gene names: NA
Gene position: 478678-480555 (Clockwise)
Preceding gene: 21226475
Following gene: 21226477
Centisome position: 11.69
GC content: 47.23
Gene sequence:
>1878_bases ATGCCTTTTCAAAACCCCCTTGCTCTTGCCGCTCTCCTGAGTGTCATCCCGCTTATAATTATTTACATGCTCCGCCCGAA GCCAGCAGTGCTTTCTATTCCCTCGTTGATGTTTGTCCTCAAGCTTGACAGGGAACGAAAACGGGTTTATGCTTCTCTCA CAAAAGTCGTTCGTGACCCACTTTTCCTGATCCAGCTCCTTATGCTGATCCTACTTTCCATTGGAGCGGCTGGTTACTAT TATACTTCAGAAGAGCCTCTTAGCGGAGAGCATACCGTACTTGTACTTGACACTTCGGCAAGCATGCAGGTAGATTCCCG TTTTGAAGATGCTGTTCGAATTGCCGACGGCTATGTTAGCAAAAAAAACAGCATAATCCTTGCTTCCAACATCCCCCAGC TTGCCCTTGAAGGCGGAAGCGCTTCAGCTGCTGAAGACATTTTCAATAAGGTCAAACCCGGAGCCGGTACTGCCGATTTG TCTGCAGCCGTTACTACAGGTATGCGCCTCCTCTCTGAAGAAGGGGGCAGGATTATTGTCATTTCAGACTTTACTAACTG GGTAGGGGATGACCCTGTAGCCTCCAAAAACCTGGCTGAGTCCTACGGGCTTAAGGTTAATTTCATAAAGGTCGGAAAGC CCGCGGAAAATATAGGGATCATTAATGGGTGGATTGAAGCCGTTGACGGAGAATACGGTTATACGGGCGTGGTTAAAAAC TACAGGAGCGAAAGTAAAACCGTTGAAATCATGACCGGAAGAGGGACTTCTGGAAATGCTTCAAAGTCCTTTACCCTTGA CGTCCCTGCAGGCGGCACAAACCAGTTCAAACTTGCAAACCTGGGTCCCGGCACCACCACAATCAGCCTGAATGTTGATG ATAGCCTGGACGTTGACAACAAAGCCTATATCTCCATTCCGGACACTTCCGGACAGCATATCCTCTATGTCACGGATAAT GGGAAGCTGCCTTCAAAAACAGCACTTTCCCTGGTCCCGAATATTGATCTTGAAATTCGGAAGTCTCTGCCTTCTGCCCT TGACAGCTATACACTGGTTGTGCTTGCCCAGAAACAGAACCCCATTGCCAACAGCTCTGTGGATAAAATAGAAACTTACG TGCGGAACGGAGGAAATGCAGTCTTTATTGCAAGCGAAGCCCTTTCCCCGGAGAAAACCGAGGTTGGCCTTGTTAAACTC CTGCCTGTAAAGCCTCTTGGAGTAGAAGAGGCAGAAAACGGGCTTAAAGTTAAAGAAACTCTCAAAAGCAGCATCACGGA AGATATGAAAAGTGAAGAAATATCAGTACGCAGATATATGAACGCAACGGAAAGGACAGGTTCCACAACCCTCGTAGCCA CGGAAAGCGGCATACCTCTACTAAGCTACTGGCAGACAGGTAAGGGAACCATATTTTATATGGGTCTTAATGACGAGCTC GGAGACGGTGCCTGGAACAACTTCCATAACCTGCCTGAATACCCGGTTTTCTGGATAAAGCTTGTTGAATGGCTCGGAGG AATTGGTGACATCTCAGAGTACAACCTTGAAGCAGGTACGGTCACTTCCCTTTCAAAAACCGAGGAAATCCGGACTCCCT CAAAAACCCTGACAGCAAACAGTTTGCTTTACGACGAAGTGGGGATATACGAAGTATCAGGCAAGAGGATTGCAGTCAAT ATGTATGATGACAGGGAATCAAATACCACAGTGGACTCCTCGGAACTTATCAGTCGTTCACTTGAAAATGATGAGCCCAA AACCATGAAGTCCGAGACCTATACTGCAAGAAACGAGATTACCAATTATCTTATAGGAATCCTGTTCCTGCTTATGCTGC TTGAAATCCTTATCGTCCGCGGGAGGGGTGAACTGTGA
Upstream 100 bases:
>100_bases AGACCTGCATGAAGGTCGGAGCCGAGTTCTATACCTTTACAACCGACACTCCTGTTTTTAATGCTTTCTACAATACTATC AGGAGAAGGAGACGCTAAAA
Downstream 100 bases:
>100_bases ACATAGCCCTTGAAAGCCCTGAGATGCTTCTGCTTATTATTCCGGTCATTATTGCAGGCTTTTATCTACTGCGGAAAACG AAAACGAAACTTGTGGAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MPFQNPLALAALLSVIPLIIIYMLRPKPAVLSIPSLMFVLKLDRERKRVYASLTKVVRDPLFLIQLLMLILLSIGAAGYY YTSEEPLSGEHTVLVLDTSASMQVDSRFEDAVRIADGYVSKKNSIILASNIPQLALEGGSASAAEDIFNKVKPGAGTADL SAAVTTGMRLLSEEGGRIIVISDFTNWVGDDPVASKNLAESYGLKVNFIKVGKPAENIGIINGWIEAVDGEYGYTGVVKN YRSESKTVEIMTGRGTSGNASKSFTLDVPAGGTNQFKLANLGPGTTTISLNVDDSLDVDNKAYISIPDTSGQHILYVTDN GKLPSKTALSLVPNIDLEIRKSLPSALDSYTLVVLAQKQNPIANSSVDKIETYVRNGGNAVFIASEALSPEKTEVGLVKL LPVKPLGVEEAENGLKVKETLKSSITEDMKSEEISVRRYMNATERTGSTTLVATESGIPLLSYWQTGKGTIFYMGLNDEL GDGAWNNFHNLPEYPVFWIKLVEWLGGIGDISEYNLEAGTVTSLSKTEEIRTPSKTLTANSLLYDEVGIYEVSGKRIAVN MYDDRESNTTVDSSELISRSLENDEPKTMKSETYTARNEITNYLIGILFLLMLLEILIVRGRGEL
Sequences:
>Translated_625_residues MPFQNPLALAALLSVIPLIIIYMLRPKPAVLSIPSLMFVLKLDRERKRVYASLTKVVRDPLFLIQLLMLILLSIGAAGYY YTSEEPLSGEHTVLVLDTSASMQVDSRFEDAVRIADGYVSKKNSIILASNIPQLALEGGSASAAEDIFNKVKPGAGTADL SAAVTTGMRLLSEEGGRIIVISDFTNWVGDDPVASKNLAESYGLKVNFIKVGKPAENIGIINGWIEAVDGEYGYTGVVKN YRSESKTVEIMTGRGTSGNASKSFTLDVPAGGTNQFKLANLGPGTTTISLNVDDSLDVDNKAYISIPDTSGQHILYVTDN GKLPSKTALSLVPNIDLEIRKSLPSALDSYTLVVLAQKQNPIANSSVDKIETYVRNGGNAVFIASEALSPEKTEVGLVKL LPVKPLGVEEAENGLKVKETLKSSITEDMKSEEISVRRYMNATERTGSTTLVATESGIPLLSYWQTGKGTIFYMGLNDEL GDGAWNNFHNLPEYPVFWIKLVEWLGGIGDISEYNLEAGTVTSLSKTEEIRTPSKTLTANSLLYDEVGIYEVSGKRIAVN MYDDRESNTTVDSSELISRSLENDEPKTMKSETYTARNEITNYLIGILFLLMLLEILIVRGRGEL >Mature_624_residues PFQNPLALAALLSVIPLIIIYMLRPKPAVLSIPSLMFVLKLDRERKRVYASLTKVVRDPLFLIQLLMLILLSIGAAGYYY TSEEPLSGEHTVLVLDTSASMQVDSRFEDAVRIADGYVSKKNSIILASNIPQLALEGGSASAAEDIFNKVKPGAGTADLS AAVTTGMRLLSEEGGRIIVISDFTNWVGDDPVASKNLAESYGLKVNFIKVGKPAENIGIINGWIEAVDGEYGYTGVVKNY RSESKTVEIMTGRGTSGNASKSFTLDVPAGGTNQFKLANLGPGTTTISLNVDDSLDVDNKAYISIPDTSGQHILYVTDNG KLPSKTALSLVPNIDLEIRKSLPSALDSYTLVVLAQKQNPIANSSVDKIETYVRNGGNAVFIASEALSPEKTEVGLVKLL PVKPLGVEEAENGLKVKETLKSSITEDMKSEEISVRRYMNATERTGSTTLVATESGIPLLSYWQTGKGTIFYMGLNDELG DGAWNNFHNLPEYPVFWIKLVEWLGGIGDISEYNLEAGTVTSLSKTEEIRTPSKTLTANSLLYDEVGIYEVSGKRIAVNM YDDRESNTTVDSSELISRSLENDEPKTMKSETYTARNEITNYLIGILFLLMLLEILIVRGRGEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68029; Mature: 67898
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFQNPLALAALLSVIPLIIIYMLRPKPAVLSIPSLMFVLKLDRERKRVYASLTKVVRDP CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHEEEHHHHCHHHHHHHHHHHHHHHCH LFLIQLLMLILLSIGAAGYYYTSEEPLSGEHTVLVLDTSASMQVDSRFEDAVRIADGYVS HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHCCCC KKNSIILASNIPQLALEGGSASAAEDIFNKVKPGAGTADLSAAVTTGMRLLSEEGGRIIV CCCCEEEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE ISDFTNWVGDDPVASKNLAESYGLKVNFIKVGKPAENIGIINGWIEAVDGEYGYTGVVKN EECCCCCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCCEEEHHHHHCCCCCCCHHHHHH YRSESKTVEIMTGRGTSGNASKSFTLDVPAGGTNQFKLANLGPGTTTISLNVDDSLDVDN HCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC KAYISIPDTSGQHILYVTDNGKLPSKTALSLVPNIDLEIRKSLPSALDSYTLVVLAQKQN EEEEEECCCCCCEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEECCC PIANSSVDKIETYVRNGGNAVFIASEALSPEKTEVGLVKLLPVKPLGVEEAENGLKVKET CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHCCCCHHHHH LKSSITEDMKSEEISVRRYMNATERTGSTTLVATESGIPLLSYWQTGKGTIFYMGLNDEL HHHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCC GDGAWNNFHNLPEYPVFWIKLVEWLGGIGDISEYNLEAGTVTSLSKTEEIRTPSKTLTAN CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHCCCCHHEECC SLLYDEVGIYEVSGKRIAVNMYDDRESNTTVDSSELISRSLENDEPKTMKSETYTARNEI CEEECCCCEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH TNYLIGILFLLMLLEILIVRGRGEL HHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PFQNPLALAALLSVIPLIIIYMLRPKPAVLSIPSLMFVLKLDRERKRVYASLTKVVRDP CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHEEEHHHHCHHHHHHHHHHHHHHHCH LFLIQLLMLILLSIGAAGYYYTSEEPLSGEHTVLVLDTSASMQVDSRFEDAVRIADGYVS HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHCCCC KKNSIILASNIPQLALEGGSASAAEDIFNKVKPGAGTADLSAAVTTGMRLLSEEGGRIIV CCCCEEEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE ISDFTNWVGDDPVASKNLAESYGLKVNFIKVGKPAENIGIINGWIEAVDGEYGYTGVVKN EECCCCCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCCEEEHHHHHCCCCCCCHHHHHH YRSESKTVEIMTGRGTSGNASKSFTLDVPAGGTNQFKLANLGPGTTTISLNVDDSLDVDN HCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC KAYISIPDTSGQHILYVTDNGKLPSKTALSLVPNIDLEIRKSLPSALDSYTLVVLAQKQN EEEEEECCCCCCEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEECCC PIANSSVDKIETYVRNGGNAVFIASEALSPEKTEVGLVKLLPVKPLGVEEAENGLKVKET CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHCCCCHHHHH LKSSITEDMKSEEISVRRYMNATERTGSTTLVATESGIPLLSYWQTGKGTIFYMGLNDEL HHHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCC GDGAWNNFHNLPEYPVFWIKLVEWLGGIGDISEYNLEAGTVTSLSKTEEIRTPSKTLTAN CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHCCCCHHEECC SLLYDEVGIYEVSGKRIAVNMYDDRESNTTVDSSELISRSLENDEPKTMKSETYTARNEI CEEECCCCEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH TNYLIGILFLLMLLEILIVRGRGEL HHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA