| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226469
Identifier: 21226469
GI number: 21226469
Start: 472177
End: 472731
Strand: Reverse
Name: 21226469
Synonym: MM_0367
Alternate gene names: NA
Gene position: 472731-472177 (Counterclockwise)
Preceding gene: 21226478
Following gene: 21226463
Centisome position: 11.54
GC content: 42.16
Gene sequence:
>555_bases ATGAGGCCAACAGACGATCTGAGAGAAGAACACAGGGCTGTCGAACTGATGCTGGAAATACTTGACAGCGTATGCACGAA TATAGAGTCAGGAAAAAGTGTTGAACAGGAGCATCTTGAGAAACTCGTGGAGTTCATGAGAATATTCGTTGATAAATGCC ATCACACAAAGGAAGAGGCTCATCTTTTTCCTGAAATGGTAAAGAGAGAAATTCCAGGCACAGGAGAACTAATTGATTCT CTTTTGAAGGAACATAACCAGGCAAGGGAATATGTCGGCAGGATAGAAAAAACGGTTTCCGGAAAGGAATGGGATAAAAA AGGTTCTGGAATAGTTGAGAACTCAAGGGCATATATTCAACTTCTGGCGCAGCATATCGAGAAAGAGAATAATGGCCTTT TCCCAAAAGCTGACGCATACCTTGATTCGGGAGTCCAGAAAGAGTTACTTGACTCTTTTGAACGTGTAGAAGATGAAGAA ATAGGTGCAGGCAAGCATGAAAAATTCCACCTGCTCCTGCACGAGCTCAAAGATATATATTTAAAGTCCGCGTGA
Upstream 100 bases:
>100_bases GAAATTAGAACTTACAAAAAAGCAGGCAGCAGGAGAATAAACATAACCGGATATCCGAAAGAAGCCGGGTTTCAAATTAC TGGAAAATGGTGGGGAAAAT
Downstream 100 bases:
>100_bases AATCTCGCCCTAGTCCCGTCTCGGGAGGTCGGTGTCCTTTCCGCCTCGAATCGCGCCTCGGGAGGACGGTGTCCTTTTCG CTCGCTTTGCTCTCTCAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MRPTDDLREEHRAVELMLEILDSVCTNIESGKSVEQEHLEKLVEFMRIFVDKCHHTKEEAHLFPEMVKREIPGTGELIDS LLKEHNQAREYVGRIEKTVSGKEWDKKGSGIVENSRAYIQLLAQHIEKENNGLFPKADAYLDSGVQKELLDSFERVEDEE IGAGKHEKFHLLLHELKDIYLKSA
Sequences:
>Translated_184_residues MRPTDDLREEHRAVELMLEILDSVCTNIESGKSVEQEHLEKLVEFMRIFVDKCHHTKEEAHLFPEMVKREIPGTGELIDS LLKEHNQAREYVGRIEKTVSGKEWDKKGSGIVENSRAYIQLLAQHIEKENNGLFPKADAYLDSGVQKELLDSFERVEDEE IGAGKHEKFHLLLHELKDIYLKSA >Mature_184_residues MRPTDDLREEHRAVELMLEILDSVCTNIESGKSVEQEHLEKLVEFMRIFVDKCHHTKEEAHLFPEMVKREIPGTGELIDS LLKEHNQAREYVGRIEKTVSGKEWDKKGSGIVENSRAYIQLLAQHIEKENNGLFPKADAYLDSGVQKELLDSFERVEDEE IGAGKHEKFHLLLHELKDIYLKSA
Specific function: Unknown
COG id: COG3945
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21263; Mature: 21263
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPTDDLREEHRAVELMLEILDSVCTNIESGKSVEQEHLEKLVEFMRIFVDKCHHTKEEA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH HLFPEMVKREIPGTGELIDSLLKEHNQAREYVGRIEKTVSGKEWDKKGSGIVENSRAYIQ HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LLAQHIEKENNGLFPKADAYLDSGVQKELLDSFERVEDEEIGAGKHEKFHLLLHELKDIY HHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH LKSA HCCC >Mature Secondary Structure MRPTDDLREEHRAVELMLEILDSVCTNIESGKSVEQEHLEKLVEFMRIFVDKCHHTKEEA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH HLFPEMVKREIPGTGELIDSLLKEHNQAREYVGRIEKTVSGKEWDKKGSGIVENSRAYIQ HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LLAQHIEKENNGLFPKADAYLDSGVQKELLDSFERVEDEEIGAGKHEKFHLLLHELKDIY HHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH LKSA HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA