Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226394
Identifier: 21226394
GI number: 21226394
Start: 390887
End: 391456
Strand: Reverse
Name: 21226394
Synonym: MM_0292
Alternate gene names: NA
Gene position: 391456-390887 (Counterclockwise)
Preceding gene: 21226395
Following gene: 21226393
Centisome position: 9.56
GC content: 50.18
Gene sequence:
>570_bases ATGGCAGGCTTCTTCAGAGAAGCGGCTCGCAGGGTTTTTGCCCGGGAGCTGAAAGACTCGAACCTCACCTCAAAGGATGA AAGCGACCAGTATGCCCCTCAATATCTCCTTACCCCCACAGGGGCGAAAGTGAACCGCATCTTTATTGTGGGCACACTCA TTGAAAAAGAAGACATCGGGACCGACTCCGAATACTGGAGGGGCAGGGTTTCCGACCCAACAGGTTCCTTCCTTATTTAT GCAGGACAGTACCAGCCAGAAGCCGCTCAGTTCCTTGCAGAATGCGAACTTCCGGCTTTTGTTGCCGTAATCGGCAAGAC CAGTACCTATACCACGGACGACGGAAATGTCCTGACCTCAATCCGCCCTGAGTCTATCCAGCAGGTAGACGAGCTGACGA GGAATCTCTGGGTACTTGATACTGCAAAGCAAACCCTTGAAAGGATAAGAGCTGTTGAGGCACAGGAAGACCCCAACGCA AGGCTTGCAAAAGAGCACTATTCCATTGATACTGAAATTTACCGCGAAATGGTGAAAAAAGCTCTGGAATCACTTCAAGA TAATACCTGA
Upstream 100 bases:
>100_bases CTATATCCTTGTAGAATCGATTACTCCACGGACTTCCCTTGACAGGGAGCTCCTTGACCAGATGCTTGCTGAACCGATTG CTCAGCCGGAGGTGGAGTGA
Downstream 100 bases:
>100_bases AAACAGTAAAGCCTTAACTGAATAAAAATTATATTAAACAGTGGGAAATTCAGGGAATTTTTATCCTGAATTTTTTTACT TTTTATAAAGAAACTTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MAGFFREAARRVFARELKDSNLTSKDESDQYAPQYLLTPTGAKVNRIFIVGTLIEKEDIGTDSEYWRGRVSDPTGSFLIY AGQYQPEAAQFLAECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVDELTRNLWVLDTAKQTLERIRAVEAQEDPNA RLAKEHYSIDTEIYREMVKKALESLQDNT
Sequences:
>Translated_189_residues MAGFFREAARRVFARELKDSNLTSKDESDQYAPQYLLTPTGAKVNRIFIVGTLIEKEDIGTDSEYWRGRVSDPTGSFLIY AGQYQPEAAQFLAECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVDELTRNLWVLDTAKQTLERIRAVEAQEDPNA RLAKEHYSIDTEIYREMVKKALESLQDNT >Mature_188_residues AGFFREAARRVFARELKDSNLTSKDESDQYAPQYLLTPTGAKVNRIFIVGTLIEKEDIGTDSEYWRGRVSDPTGSFLIYA GQYQPEAAQFLAECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVDELTRNLWVLDTAKQTLERIRAVEAQEDPNAR LAKEHYSIDTEIYREMVKKALESLQDNT
Specific function: Unknown
COG id: COG3390
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21393; Mature: 21262
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGFFREAARRVFARELKDSNLTSKDESDQYAPQYLLTPTGAKVNRIFIVGTLIEKEDIG CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCC TDSEYWRGRVSDPTGSFLIYAGQYQPEAAQFLAECELPAFVAVIGKTSTYTTDDGNVLTS CCHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHEECCCCEEECCCCCEEEC IRPESIQQVDELTRNLWVLDTAKQTLERIRAVEAQEDPNARLAKEHYSIDTEIYREMVKK CCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHH ALESLQDNT HHHHHCCCC >Mature Secondary Structure AGFFREAARRVFARELKDSNLTSKDESDQYAPQYLLTPTGAKVNRIFIVGTLIEKEDIG CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCC TDSEYWRGRVSDPTGSFLIYAGQYQPEAAQFLAECELPAFVAVIGKTSTYTTDDGNVLTS CCHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHEECCCCEEECCCCCEEEC IRPESIQQVDELTRNLWVLDTAKQTLERIRAVEAQEDPNARLAKEHYSIDTEIYREMVKK CCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHH ALESLQDNT HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA