Click here to switch to the map view.

The map label for this gene is xerC [C]

Identifier: 21226254

GI number: 21226254

Start: 191930

End: 193066

Strand: Reverse

Name: xerC [C]

Synonym: MM_0152

Alternate gene names: 21226254

Gene position: 193066-191930 (Counterclockwise)

Preceding gene: 21226257

Following gene: 21226253

Centisome position: 4.71

GC content: 39.14

Gene sequence:

>1137_bases
ATGAAAAATCCTCCAGAGTTTACAGGGAAGAACAAAGAGATTATTGACGACTATATCCGTTATGCTGTGCTAGCTGGGAA
GAAAGAGAAGTCAATTCTTGGGGAACAATGGAGATTAAAGGCATTTATTGAGTTCATAAAAAATAAATCCCTTAACACAG
TCGAGAAAAAAGATATAGAGAATTTTATTATTCACCGCAAAATAACATGCAGTGAAACAACCGTGCATAATAATTTTTTG
ACCCTAAGAACTTTCTTTCAATGGCTAAAACCCGATAATGACTTTTTTACAGGAATCAAAAGCAAGCAACCCAAAAATAA
CCTGCCTGTAGATGAAGTTCTTTTTCCTGGAGATGTCCTTACCCTGCGGGATGCTGCGAACAATCAGAGAGATAGGGCTT
TAGTTATGGTACTCTGGGACTCCGCAACAAGAAAAGGTGAACTATTGAACATAAACATAGGACATATCCAGCCTGACAAA
TATGGAGCTACAGTTATTGTTGACGGAAAGACTGGGAAAAGAAGAATAAGGCTTATTGATAGCGTCCCAGACCTGCAGCT
TTATCTGAATATTCATCCCCTCAGGGATGATCCTAGCGCTCCACTGTTCATCACAGATAGGAAATATAATGGAAATTACC
GGAGGCTCAATGAACAGACAGTAAACAATATGCTAAATAGCCTCGCAGATAAGGCCGGAATAAAAAAGAATGTTTATCCT
CATGCTTTTCGACATGGTCGGTTAACAGATCTTGCTAAAAGAGGATTTAATGAGATGGAGTTAAGGATATTTGCAGGGTG
GACTAAAGAGAGCAACATGCCTGCAACCTACTTGCATCTTTCAGGTGCAGATATTGAGAAGAAGTTACTTGCGAAGAATG
GAATTATTGAAGATGACAGTAAAGAAAGAGAAGAAGAACTGAAGCCTGCTGATTGTCCTAGATGCAAGACCAAGAACCCG
GTTGGAGCTAAGTACTGTATGACCTGCTCACTTGTATTAGATCAGGCTACAGCCATTGAGATGGAAAAGGGATCAAATGA
TCTTGATAGAAACCTTGGAGCAGTCATGGCAAATACTGAGCTAAAGGAAAAACTTAAACAGGAGATAATAGCAGAAATGC
TGAAAAAAATTTCCTGA

Upstream 100 bases:

>100_bases
TTCGAACGCACGAACTCCTACAAGACTGGACTCTGAATCCTGCATACAATATGATACTGGATTTAGACATATTTTTATAT
AAAGTCCTTGTATTACTGTT

Downstream 100 bases:

>100_bases
ATTAAATTTCTTTTATTTCTACTTTTTTATGTCTTCTAGAACGGTAATCTAGAATCTTATTCATCCGTTATTCTCTCCTG
AAGAAGACTGACTTCATCTT

Product: DNA integration/recombination/invertion protein

Products: NA

Alternate protein names: Phage Integrase; Integrase; Phage Integrase Family Protein; XerC/D-Like Integrase; DNA Integration/Recombination/Invertion Protein; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Tyrosine Recombinase XerC; Integrase/Recombinase; Tyrosine Recombinase XerD Subunit; Transposase A; Phage Integrase Family Integrase/Recombinase; Tyrosine Recombinase XerD; Site-Specific Tyrosine Recombinase; Site-Specific Recombinase Xerd; Integrase-Like Protein; Tyrosine Type Site-Specific Recombinase

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKNPPEFTGKNKEIIDDYIRYAVLAGKKEKSILGEQWRLKAFIEFIKNKSLNTVEKKDIENFIIHRKITCSETTVHNNFL
TLRTFFQWLKPDNDFFTGIKSKQPKNNLPVDEVLFPGDVLTLRDAANNQRDRALVMVLWDSATRKGELLNINIGHIQPDK
YGATVIVDGKTGKRRIRLIDSVPDLQLYLNIHPLRDDPSAPLFITDRKYNGNYRRLNEQTVNNMLNSLADKAGIKKNVYP
HAFRHGRLTDLAKRGFNEMELRIFAGWTKESNMPATYLHLSGADIEKKLLAKNGIIEDDSKEREEELKPADCPRCKTKNP
VGAKYCMTCSLVLDQATAIEMEKGSNDLDRNLGAVMANTELKEKLKQEIIAEMLKKIS

Sequences:

>Translated_378_residues
MKNPPEFTGKNKEIIDDYIRYAVLAGKKEKSILGEQWRLKAFIEFIKNKSLNTVEKKDIENFIIHRKITCSETTVHNNFL
TLRTFFQWLKPDNDFFTGIKSKQPKNNLPVDEVLFPGDVLTLRDAANNQRDRALVMVLWDSATRKGELLNINIGHIQPDK
YGATVIVDGKTGKRRIRLIDSVPDLQLYLNIHPLRDDPSAPLFITDRKYNGNYRRLNEQTVNNMLNSLADKAGIKKNVYP
HAFRHGRLTDLAKRGFNEMELRIFAGWTKESNMPATYLHLSGADIEKKLLAKNGIIEDDSKEREEELKPADCPRCKTKNP
VGAKYCMTCSLVLDQATAIEMEKGSNDLDRNLGAVMANTELKEKLKQEIIAEMLKKIS
>Mature_378_residues
MKNPPEFTGKNKEIIDDYIRYAVLAGKKEKSILGEQWRLKAFIEFIKNKSLNTVEKKDIENFIIHRKITCSETTVHNNFL
TLRTFFQWLKPDNDFFTGIKSKQPKNNLPVDEVLFPGDVLTLRDAANNQRDRALVMVLWDSATRKGELLNINIGHIQPDK
YGATVIVDGKTGKRRIRLIDSVPDLQLYLNIHPLRDDPSAPLFITDRKYNGNYRRLNEQTVNNMLNSLADKAGIKKNVYP
HAFRHGRLTDLAKRGFNEMELRIFAGWTKESNMPATYLHLSGADIEKKLLAKNGIIEDDSKEREEELKPADCPRCKTKNP
VGAKYCMTCSLVLDQATAIEMEKGSNDLDRNLGAVMANTELKEKLKQEIIAEMLKKIS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43234; Mature: 43234

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPPEFTGKNKEIIDDYIRYAVLAGKKEKSILGEQWRLKAFIEFIKNKSLNTVEKKDIE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
NFIIHRKITCSETTVHNNFLTLRTFFQWLKPDNDFFTGIKSKQPKNNLPVDEVLFPGDVL
HHHHEEEEECCCCEECCCEEEHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHEECCCCEE
TLRDAANNQRDRALVMVLWDSATRKGELLNINIGHIQPDKYGATVIVDGKTGKRRIRLID
EEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECEECCCCCCCEEEEECCCCCCEEEEEC
SVPDLQLYLNIHPLRDDPSAPLFITDRKYNGNYRRLNEQTVNNMLNSLADKAGIKKNVYP
CCCCEEEEEEEEECCCCCCCCEEEEECCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCC
HAFRHGRLTDLAKRGFNEMELRIFAGWTKESNMPATYLHLSGADIEKKLLAKNGIIEDDS
HHHCCCCHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCC
KEREEELKPADCPRCKTKNPVGAKYCMTCSLVLDQATAIEMEKGSNDLDRNLGAVMANTE
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHEEECHH
LKEKLKQEIIAEMLKKIS
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNPPEFTGKNKEIIDDYIRYAVLAGKKEKSILGEQWRLKAFIEFIKNKSLNTVEKKDIE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
NFIIHRKITCSETTVHNNFLTLRTFFQWLKPDNDFFTGIKSKQPKNNLPVDEVLFPGDVL
HHHHEEEEECCCCEECCCEEEHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHEECCCCEE
TLRDAANNQRDRALVMVLWDSATRKGELLNINIGHIQPDKYGATVIVDGKTGKRRIRLID
EEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECEECCCCCCCEEEEECCCCCCEEEEEC
SVPDLQLYLNIHPLRDDPSAPLFITDRKYNGNYRRLNEQTVNNMLNSLADKAGIKKNVYP
CCCCEEEEEEEEECCCCCCCCEEEEECCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCC
HAFRHGRLTDLAKRGFNEMELRIFAGWTKESNMPATYLHLSGADIEKKLLAKNGIIEDDS
HHHCCCCHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCC
KEREEELKPADCPRCKTKNPVGAKYCMTCSLVLDQATAIEMEKGSNDLDRNLGAVMANTE
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHEEECHH
LKEKLKQEIIAEMLKKIS
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA