| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226253
Identifier: 21226253
GI number: 21226253
Start: 189183
End: 191069
Strand: Reverse
Name: 21226253
Synonym: MM_0151
Alternate gene names: NA
Gene position: 191069-189183 (Counterclockwise)
Preceding gene: 21226254
Following gene: 21226245
Centisome position: 4.66
GC content: 40.38
Gene sequence:
>1887_bases ATGTTCAACAACCCTACTGACAGAATTAACTTTATGATTAGTGCAAACAGCGAGTTACCGGAAGATAAGAGATACTCTGA CGAAGAGATTGAAATGTATTCAGAAGCAATATCAGAAGCACTTGAAGTGTGTGACCCTGACTTCAACGAAGATGCGGTAA CTGAACTTATGCACAGAACTGAAGTACCTGCTACAAAGAATGACAGGCTTGTAGTTGCAGTTAAGTTTGCTAAGGATCAC CTTTCTAGGTTTGATATAGAAGAGGTAAGGCTGTTTGTAAACGTAGATATGAGAGCTTATTTCTCACTTACAAAAGAAGA CCGCTCAACTATAATTGCAAAGATAGAAAACGAGAAGAGAAAAGCAGGAAGCGCAAAAACACCCAGCAAAAAGAGTAGAG ACAGTGATTCCGAAAACGGTGGAAGCAAAACAGCTATACTGTGCAACGATCTTGCTGACTCATATCTTGAATCATATCCT ACAGTTACTCTTGAAGACGGAGTGACCAGAACATACCACAATGGAGTATATCAGGAGTGCAGAAACAAGTACATCATCAA CAATAGGATGATGGACATTGCGGAAGATATGGGAATAGTCCTGACCCCTAAGCAAATACAGGATGCTCTTGAGATAGTGA GAAACAAAACACCATTCACTGAGTCAAAAACGCCAATTAATCTTATTCCTGTAGGAAATGGAGTACTTGACATAAATACT ATGGAGCTTAGTGATTACTCCCCAGAGACTGTACTGCTTACTAAATTCCCGAGAGACTACAATCCAAGTGCCGCAACACC TTCAAAATTTATGGAAATGCTAAATACAACATTTGATGGAAGCGAAGAGCAAATAAAGCTTGTTCAGGAAATGTTTGGAT ACTGCTTCCTTAGAAGCTACTTCTTAGAGGTAATCTTCTTCCTGATAGGAAATGGTAGGAATGGTAAGACAACACTCCTT AACATTCTTGGTGCTCTTCTTGGAGGAGAGGAGTCTGGACACATTTCAAATCTGTCATTCAAAGACCTGTCAGAACCTAA GAACGAGAACATGTTGTGTGACCTTTACGGAAGGTATGCCAACATCTGCGGTGACACTGGAAAGCACAAGATTAAGGAGA CAGACTACATTAAGAAAGTAACAGGTAACGACTTTGTTAGAGCCAGAAAACTGTACAAGGACAGCTTTAACTTCAAGAGT TTTGCCAAAGTAATACTGGCCTTTAACCAGCTTCCAGAAGTTGATGACTTCTCTGACGGATTCAAGAGAAGGATCAGGAT CATAGAATTCAACCATAAGTTCGAAGATGGTGCTGGTGCTAACAAGAACATTGAAGCTGAGATTACAGGTGATGAAGAAG AGATGGAAGGCATATTCCTGTGGGCAATGGAAGGTCTAAAGAGAATCCTTGAAAATAACAGCTTCTCAGACAAGAGATCA ATAGTAAGCAGAGGCATGGAATACGCAAGGAAAAGCAATCCAATGCACTACTTCGTTAGAGAGTGTATTGTTGAAAGCCC TGGACACTTCGTTAATAAGGCAGATCTTATAGAAAAGTATGTAGAGTATGCTGAGTACAACAAAATGCCACAGCTAACCC CTCAAGCATTCAAGAAAGGTCTAATAGCTGAATGCACTGACATAAGCATAAACACATTCGAGAAGAGAGATCAGACAAAG ACAGGTAGACCTTTTGGGTTCATGCACATTGATATTGACCTAGAATCATGGAAGAAGCACACAGGTAAGGCTGATAACGC CTCTCCTGTTGAACCTAAAGAAGACTCTAAACAAACACAGTTCAAGGAATTGGAAATACAGATCGCAACAACTGATGAAG AGATTAGAAAGGTTGCGGAAGACATGGCAAGTACAGCTTCTGCTTGA
Upstream 100 bases:
>100_bases TACTGCATGCGTTTGTCTGTTTTCTCTTTTTCAAAACCATGATTTCAGAAAAGGTGATTGAAAAATGGATAACTTCCCAG TAATAATGACAGCGGCACAG
Downstream 100 bases:
>100_bases TTTCAGCGCAACACCTGCCACAGAAATGTGGCTTACTTTCCAATTTTTTGAATAAATAAACTTTTTTTAACATTTAAACT GTTTACTTCTTTACTGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage/Plasmid Primase P4 Family; DNA Primase; Primase; Phage Primase; Phage/Plasmid Primase; DNA Primase/Helicase; Phage DNA Polymerase; Nucleoside Triphosphatase D5 Family; Phage/Plasmid DNA Primase; Phage-Associated Protein; ATPase-Like Protein; RepA Protein; Phage/Plasmid Primase P4-Like; Phage Associated DNA Primase; Phage DNA Primase; Replication Protein; P4-Specific DNA Primase; Phage Replication Protein; Helicase-Like Protein; DNA Primase Small Subunit; Phage/Plasmid Primase P4-Like Protein; Prophage; ATPase; Prophage Lsa1 DNA Primase; Phage-Like Protein; Bacteriophage-Related Protein; D5 N-Terminal Domain Family Protein; Plasmid/Phage Primase; Phage Associated Protein; Phage/Plasmid Primase P4 C-Terminal Protein; Bacteriophage Protein; Primase Superantigen-Encoding Pathogenicity Islands SaPI; DNA-Polymerase Or DNA-Primase; DNA Primase Domain-Containing Protein; DNA Primase Phage/Plasmid
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MFNNPTDRINFMISANSELPEDKRYSDEEIEMYSEAISEALEVCDPDFNEDAVTELMHRTEVPATKNDRLVVAVKFAKDH LSRFDIEEVRLFVNVDMRAYFSLTKEDRSTIIAKIENEKRKAGSAKTPSKKSRDSDSENGGSKTAILCNDLADSYLESYP TVTLEDGVTRTYHNGVYQECRNKYIINNRMMDIAEDMGIVLTPKQIQDALEIVRNKTPFTESKTPINLIPVGNGVLDINT MELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIKLVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLL NILGALLGGEESGHISNLSFKDLSEPKNENMLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFKS FAKVILAFNQLPEVDDFSDGFKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWAMEGLKRILENNSFSDKRS IVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYVEYAEYNKMPQLTPQAFKKGLIAECTDISINTFEKRDQTK TGRPFGFMHIDIDLESWKKHTGKADNASPVEPKEDSKQTQFKELEIQIATTDEEIRKVAEDMASTASA
Sequences:
>Translated_628_residues MFNNPTDRINFMISANSELPEDKRYSDEEIEMYSEAISEALEVCDPDFNEDAVTELMHRTEVPATKNDRLVVAVKFAKDH LSRFDIEEVRLFVNVDMRAYFSLTKEDRSTIIAKIENEKRKAGSAKTPSKKSRDSDSENGGSKTAILCNDLADSYLESYP TVTLEDGVTRTYHNGVYQECRNKYIINNRMMDIAEDMGIVLTPKQIQDALEIVRNKTPFTESKTPINLIPVGNGVLDINT MELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIKLVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLL NILGALLGGEESGHISNLSFKDLSEPKNENMLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFKS FAKVILAFNQLPEVDDFSDGFKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWAMEGLKRILENNSFSDKRS IVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYVEYAEYNKMPQLTPQAFKKGLIAECTDISINTFEKRDQTK TGRPFGFMHIDIDLESWKKHTGKADNASPVEPKEDSKQTQFKELEIQIATTDEEIRKVAEDMASTASA >Mature_628_residues MFNNPTDRINFMISANSELPEDKRYSDEEIEMYSEAISEALEVCDPDFNEDAVTELMHRTEVPATKNDRLVVAVKFAKDH LSRFDIEEVRLFVNVDMRAYFSLTKEDRSTIIAKIENEKRKAGSAKTPSKKSRDSDSENGGSKTAILCNDLADSYLESYP TVTLEDGVTRTYHNGVYQECRNKYIINNRMMDIAEDMGIVLTPKQIQDALEIVRNKTPFTESKTPINLIPVGNGVLDINT MELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIKLVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLL NILGALLGGEESGHISNLSFKDLSEPKNENMLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFKS FAKVILAFNQLPEVDDFSDGFKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWAMEGLKRILENNSFSDKRS IVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYVEYAEYNKMPQLTPQAFKKGLIAECTDISINTFEKRDQTK TGRPFGFMHIDIDLESWKKHTGKADNASPVEPKEDSKQTQFKELEIQIATTDEEIRKVAEDMASTASA
Specific function: Unknown
COG id: COG3378
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71588; Mature: 71588
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNNPTDRINFMISANSELPEDKRYSDEEIEMYSEAISEALEVCDPDFNEDAVTELMHRT CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EVPATKNDRLVVAVKFAKDHLSRFDIEEVRLFVNVDMRAYFSLTKEDRSTIIAKIENEKR CCCCCCCCCEEEEEEEHHHHHHHCCHHHEEEEEEECHHHHHHHHHHHHHEEEEEECCHHH KAGSAKTPSKKSRDSDSENGGSKTAILCNDLADSYLESYPTVTLEDGVTRTYHNGVYQEC HCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH RNKYIINNRMMDIAEDMGIVLTPKQIQDALEIVRNKTPFTESKTPINLIPVGNGVLDINT CCCEEECCHHHHHHHCCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEE MELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIKLVQEMFGYCFLRSY EEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FLEVIFFLIGNGRNGKTTLLNILGALLGGEESGHISNLSFKDLSEPKNENMLCDLYGRYA HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHH NICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFKSFAKVILAFNQLPEVDDFSDG HHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH FKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWAMEGLKRILENNSFSDKRS HHHEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYVEYAEYNKMPQLTPQAFKKG HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCC LIAECTDISINTFEKRDQTKTGRPFGFMHIDIDLESWKKHTGKADNASPVEPKEDSKQTQ CHHCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHHC FKELEIQIATTDEEIRKVAEDMASTASA EEEEEEEEECCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFNNPTDRINFMISANSELPEDKRYSDEEIEMYSEAISEALEVCDPDFNEDAVTELMHRT CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EVPATKNDRLVVAVKFAKDHLSRFDIEEVRLFVNVDMRAYFSLTKEDRSTIIAKIENEKR CCCCCCCCCEEEEEEEHHHHHHHCCHHHEEEEEEECHHHHHHHHHHHHHEEEEEECCHHH KAGSAKTPSKKSRDSDSENGGSKTAILCNDLADSYLESYPTVTLEDGVTRTYHNGVYQEC HCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH RNKYIINNRMMDIAEDMGIVLTPKQIQDALEIVRNKTPFTESKTPINLIPVGNGVLDINT CCCEEECCHHHHHHHCCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEE MELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIKLVQEMFGYCFLRSY EEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FLEVIFFLIGNGRNGKTTLLNILGALLGGEESGHISNLSFKDLSEPKNENMLCDLYGRYA HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHH NICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFKSFAKVILAFNQLPEVDDFSDG HHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH FKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWAMEGLKRILENNSFSDKRS HHHEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYVEYAEYNKMPQLTPQAFKKG HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCC LIAECTDISINTFEKRDQTKTGRPFGFMHIDIDLESWKKHTGKADNASPVEPKEDSKQTQ CHHCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHHC FKELEIQIATTDEEIRKVAEDMASTASA EEEEEEEEECCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA