| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is cooS1 [H]
Identifier: 21226223
GI number: 21226223
Start: 150337
End: 152223
Strand: Direct
Name: cooS1 [H]
Synonym: MM_0121
Alternate gene names: 21226223
Gene position: 150337-152223 (Clockwise)
Preceding gene: 21226216
Following gene: 21226224
Centisome position: 3.67
GC content: 50.34
Gene sequence:
>1887_bases GTGGGATGTAAAATGAAACAAACGGCATTTGAGAAAAGCATCGACCCAGCAAGTCAGAAAATGCTGGAGAAAGCGGAAAA TGAAGGCATAGAAACTGCCTGGGACAGGTATGAAAAGCAACTGCCTCAGTGCAGTTTTGGGCAATTGGGGATTTGCTGCA GGAACTGCAATATGGGGCCCTGCCGGATAGACCCTTTTGGGGAAGGGGCTGAGAAAGGGATATGCGGCGCTACGGCAGAC ATTATTGTTGCCCGGAATCTCTTAAGAATGATTGCTGCAGGAGCAGCAGCACATTCGGACCATGCCAGGGACGCAGTGTT GACTTTTAAGAAAATGACTGAAGGAGAAGCAGGAAGCTACGGGATAAAAGATAAAACAAAACTGTTCTCGCTTGCTTCAG AGTACGGGATTTCCTTAGAGGGAAAAAGCCATGAAGAAGTGGCAGGAGAACTTGCCAGTGCCCTGCTTGCGGAATTTGGA AAGCAGGAGGGGCCCATACAGTATACCCGCCGTGCCCCCGAAGCAAGGCTCAGGCTCTGGACAAGTCTCGGAATAGAGCC CAGAGGAGTTGACCGAGAAATTGTAGAATGCATGCACAGGACGCATATAGGAGTGGATAACGATGCAACTCATATACTCC TGCATGGGTTGAGGACCAGTCTCTCGGACGGCTGGGGAGGTTCCATGATCGCAACCGAGATACAGGACGTCCTTTTCGGA ACACCTGAACCAAAGAAGAGTACTGTAAACCTCGGCGTGCTCTCCCATGACAAGGTAAACGTGATCATCCACGGGCATGA ACCAATCCTCTCGGAAATGATTGTGCAAGCTGCGGAGGACCCTGAACTTCTTGAACTCGCAAAAGAGAAAGGGGCAGCAG GAATCAATGTTGCCGGAATTTGCTGTACGGGAAATGAAACCCTGATGCGCCATGGGACCCCTATTGCAGGAAACTTCCTT CAGCAGGAACTTGCAGTGGTTACAGGTGCTGTAGAAGCAATGATAGTGGACGTGCAGTGTATAATGCCAGCCCTGGGAAA CCTTACAGGCTGTTATCACACGAAATTCATATCCACATCGCCTAAAGCTGATTTCCCCGGAACTGTGAGAATGGAATTCC ATGAAGAAAGAGCTTATGACACCGCAAGGGAGATTGTGAGAACAGCTGTAGAAAACTTTCCTAACAGGAATATCGAAAAG GTAAATATTCCGGAAGAAAAGCAGGAGTGCATGGTCGGCTTCAGTGCGGAGGCAATCCTTAAAGCCCTTGGCGGCAGCCC TGCTCCACTCATCGATGCGATTGCCGGAGGTGCGGTGAAAGGGATCGGAGCAGTTGTCGGATGTAATAATGTAAAGGTCC AGCACAATTACGGGCACGTGAACCTTGTAAAGGAGCTGATAAAAAATAATGTCCTTGTGGTTACCACGGGATGCAATGCA ATTGCCTGTGCTGAAGCCGGGCTCCTTGTACCTGAGGCTGCTGCCCAGGCAGGGGATGGTCTTAAAGGAGTCTGCGAGGC TCTCGGCATTCCACCTGTTCTGCATATGGGTTCCTGCGTGGATATCAGCCGAATCCTGGTGCTTGCCTCGGCAATTGCAA AGAGCCTGGGAGTCGACATAAGCGACCTGCCTGCTGCCGGAGCAGCTCCGGAGTGGATGAGCGAAAAAGCAGTGAGTATA GGAGCTTATGTTGTTTCTTCAGGAGTGTTTACAGTACTGGGCACTGTTCCACCTGTCCTTGGAAGCCAGGCAGTCACGGC TCTTCTGACAAAAGGCCTGGATAATGTTATTGGAGCAAGCTTTGCAGTTGAGCCTGACCCCTTCAAAGCCGCAAACCTGA TGCTTGAGCACATTGAAGGAAAAAGAAAAGCATTGGGCCTGAACTGA
Upstream 100 bases:
>100_bases ATCATGTTAACCCGGTTTGTCGCATTTTTTGGGTTTGGAGACACCTTAAAAAAATAAAAACTGGATTTTCGAGCAATCTC AAAAATGTACAGATAAAGAT
Downstream 100 bases:
>100_bases GGGAGGAGGAACGTAATGAAAGACGTGATCATCCTGCCGGAACGCTGCATGGGCTGCCGCTCCTGTGAGGTTGCCTGTGC TGTTTCCCATTCAAAAAGCA
Product: carbon monoxide dehydrogenase
Products: NA
Alternate protein names: CODH 1 [H]
Number of amino acids: Translated: 628; Mature: 627
Protein sequence:
>628_residues MGCKMKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGPCRIDPFGEGAEKGICGATAD IIVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSYGIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFG KQEGPIQYTRRAPEARLRLWTSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFG TPEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAAGINVAGICCTGNETLMRHGTPIAGNFL QQELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTSPKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRNIEK VNIPEEKQECMVGFSAEAILKALGGSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNA IACAEAGLLVPEAAAQAGDGLKGVCEALGIPPVLHMGSCVDISRILVLASAIAKSLGVDISDLPAAGAAPEWMSEKAVSI GAYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGASFAVEPDPFKAANLMLEHIEGKRKALGLN
Sequences:
>Translated_628_residues MGCKMKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGPCRIDPFGEGAEKGICGATAD IIVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSYGIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFG KQEGPIQYTRRAPEARLRLWTSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFG TPEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAAGINVAGICCTGNETLMRHGTPIAGNFL QQELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTSPKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRNIEK VNIPEEKQECMVGFSAEAILKALGGSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNA IACAEAGLLVPEAAAQAGDGLKGVCEALGIPPVLHMGSCVDISRILVLASAIAKSLGVDISDLPAAGAAPEWMSEKAVSI GAYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGASFAVEPDPFKAANLMLEHIEGKRKALGLN >Mature_627_residues GCKMKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGPCRIDPFGEGAEKGICGATADI IVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSYGIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFGK QEGPIQYTRRAPEARLRLWTSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFGT PEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAAGINVAGICCTGNETLMRHGTPIAGNFLQ QELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTSPKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRNIEKV NIPEEKQECMVGFSAEAILKALGGSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNAI ACAEAGLLVPEAAAQAGDGLKGVCEALGIPPVLHMGSCVDISRILVLASAIAKSLGVDISDLPAAGAAPEWMSEKAVSIG AYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGASFAVEPDPFKAANLMLEHIEGKRKALGLN
Specific function: Probable Enzyme Of Yet Uncharacterized Activity, The Protein Is Only Expressed During Anaerobic Cultivation With Nitrate Or Nitrite As Terminal Electron Acceptors. [C]
COG id: COG1151
COG function: function code C; 6Fe-6S prismane cluster-containing protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ni-containing carbon monoxide dehydrogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016101 - InterPro: IPR010047 - InterPro: IPR004137 - InterPro: IPR011254 - InterPro: IPR016099 [H]
Pfam domain/function: PF03063 Prismane [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 66453; Mature: 66322
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGCKMKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGP CCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCC CRIDPFGEGAEKGICGATADIIVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSY CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC GIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFGKQEGPIQYTRRAPEARLRLW CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHH TSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFG HHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC TPEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAAGINVAGI CCCCCCCEEEEEEEECCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEE CCTGNETLMRHGTPIAGNFLQQELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTS EECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCC PKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRNIEKVNIPEEKQECMVGFSAEAIL CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHCCCHHHHH KALGGSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNA HHHCCCCCHHHHHHHCCHHHHHHHEEECCCEEEEECCCHHHHHHHHHHCCEEEEECCCCE IACAEAGLLVPEAAAQAGDGLKGVCEALGIPPVLHMGSCVDISRILVLASAIAKSLGVDI EEHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCH SDLPAAGAAPEWMSEKAVSIGAYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGAS HHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCHHHHHCCC FAVEPDPFKAANLMLEHIEGKRKALGLN EECCCCCHHHHHHHHHHHCCHHHHCCCC >Mature Secondary Structure GCKMKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGP CCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCC CRIDPFGEGAEKGICGATADIIVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSY CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC GIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFGKQEGPIQYTRRAPEARLRLW CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHH TSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFG HHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC TPEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAAGINVAGI CCCCCCCEEEEEEEECCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEE CCTGNETLMRHGTPIAGNFLQQELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTS EECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCC PKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRNIEKVNIPEEKQECMVGFSAEAIL CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHCCCHHHHH KALGGSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNA HHHCCCCCHHHHHHHCCHHHHHHHEEECCCEEEEECCCHHHHHHHHHHCCEEEEECCCCE IACAEAGLLVPEAAAQAGDGLKGVCEALGIPPVLHMGSCVDISRILVLASAIAKSLGVDI EEHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCH SDLPAAGAAPEWMSEKAVSIGAYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGAS HHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCHHHHHCCC FAVEPDPFKAANLMLEHIEGKRKALGLN EECCCCCHHHHHHHHHHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]