Click here to switch to the map view.

The map label for this gene is PmbA [C]

Identifier: 20094394

GI number: 20094394

Start: 919444

End: 920673

Strand: Direct

Name: PmbA [C]

Synonym: MK0958

Alternate gene names: 20094394

Gene position: 919444-920673 (Clockwise)

Preceding gene: 20094393

Following gene: 20094395

Centisome position: 54.25

GC content: 64.23

Gene sequence:

>1230_bases
ATGGCGTTGGATGACCCGCTGTCCCAGTTCGAACCCGGCCGGGCGGTCCTCCTCGAGGTGGAGACCGAGCGGGTCGAAGT
GGAACGCACCCACGACACGGGTGACCGCGGACGGGTCTCCGCCGATCGTACTATCGTCGTCCGCGTGTCGACCGATGGGG
GACTCGGTGTGGCGACGGTGGCCGACCCCGGAGAAGTCGACACGGCGGTCGAGCGCGCACTCGCATCGGCCGAGATGGGG
ACATCCGAGCCCGTCGAGTATCCCGATTCCGTCGATCCCGCACGTGTGAGCTCGTGCGATCCTTCCGCGGTCGACGAGGA
CGAGTTGTGGGACCTCCTCGAGGCGGTCGTGAACGAGGTGTCTGACGACGTGACCATCACCTCGGTCTCGGTCACCGGTG
TCCGTCGTCGTGTGATCTTCAGGACTCCTTCGGACCAGGCCGAGCGTGAGGAGTCTTCCGTCACCGTGAGTTTGGACGTC
ATAGGCGAGTTCTCCGGGTTCGCTTGGGATACCGCCGTCGGTCCACGGGACATCGATCCGGAGCTCCTCGCCCGAGAAGC
CTCGGAGATGGCCTCCGAGGCACCGAAGGAGCGGGTAAGCGGTGGCGAGCTCGCCGTCGCCTTCCACCCACGGGCGTTCT
CGGAACTCCTCACTTACGTGCTGATACCGGCTCTCTCCGGGCTCGAGGTACTGAAAGGTACCAGCGGGTTCGATCGGGGG
GATATCGGTCGTAAGGTCGGACCTGAGAGCCTGCGCGTCGTGAACGATCCGACACTCGACCGTCGGCCCGGTTCCTACGC
ATTCGACGACGAGGGTAGTACTCCGAAGCGTATGGAGCTGATCTCCGATGGAATCTTGCGGTCTTTCTACACCGACCTCT
ACTCTTCCAGGCGGCTGGGAATGGAGTCTACGGGGAGTGGATTGGGGATCAGGCGCCCGGAGCCGTCGCCAGCGAATGTT
ATCGTCCAAGGTGACGCCTCCGAGGAGGAGGTCCTGGAAGAGGCGGACCTTATCGTATACAGGACACTCGGCGCACACAC
GGCGAGTAAGGTGAGCGGACGCTTCTCGGTGACCGCACTGTGGGCGGAGACCGTGGAAGGAAGGGCGGTGCCGGTATCGG
TTCGGGGCAACCTGTACTCGTCCCTGAGGGACGCCTTGATATCCGAGGAGACCGAGCGCACGGGTGTCGTTGAACCACCG
TACGCGCTGCTACGATGCCGGGTGGGGTGA

Upstream 100 bases:

>100_bases
TCCATCCGGGGTACTGTGGCAAGGGCGGCCAGTTGGTGCCCGTGTCCGACGGTGGGCCACACGCGCTCGTGGACGGCCCC
TTCCACCTTAGATCGGGGTG

Downstream 100 bases:

>100_bases
GTGATCACTGTCAATCTTGACGGTACCGTACGAAGAATCCAATTCACTTAACTACCGGAACCCCGCCAACAATTCTCCTA
TGCCTACCGCCGGTTACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MALDDPLSQFEPGRAVLLEVETERVEVERTHDTGDRGRVSADRTIVVRVSTDGGLGVATVADPGEVDTAVERALASAEMG
TSEPVEYPDSVDPARVSSCDPSAVDEDELWDLLEAVVNEVSDDVTITSVSVTGVRRRVIFRTPSDQAEREESSVTVSLDV
IGEFSGFAWDTAVGPRDIDPELLAREASEMASEAPKERVSGGELAVAFHPRAFSELLTYVLIPALSGLEVLKGTSGFDRG
DIGRKVGPESLRVVNDPTLDRRPGSYAFDDEGSTPKRMELISDGILRSFYTDLYSSRRLGMESTGSGLGIRRPEPSPANV
IVQGDASEEEVLEEADLIVYRTLGAHTASKVSGRFSVTALWAETVEGRAVPVSVRGNLYSSLRDALISEETERTGVVEPP
YALLRCRVG

Sequences:

>Translated_409_residues
MALDDPLSQFEPGRAVLLEVETERVEVERTHDTGDRGRVSADRTIVVRVSTDGGLGVATVADPGEVDTAVERALASAEMG
TSEPVEYPDSVDPARVSSCDPSAVDEDELWDLLEAVVNEVSDDVTITSVSVTGVRRRVIFRTPSDQAEREESSVTVSLDV
IGEFSGFAWDTAVGPRDIDPELLAREASEMASEAPKERVSGGELAVAFHPRAFSELLTYVLIPALSGLEVLKGTSGFDRG
DIGRKVGPESLRVVNDPTLDRRPGSYAFDDEGSTPKRMELISDGILRSFYTDLYSSRRLGMESTGSGLGIRRPEPSPANV
IVQGDASEEEVLEEADLIVYRTLGAHTASKVSGRFSVTALWAETVEGRAVPVSVRGNLYSSLRDALISEETERTGVVEPP
YALLRCRVG
>Mature_408_residues
ALDDPLSQFEPGRAVLLEVETERVEVERTHDTGDRGRVSADRTIVVRVSTDGGLGVATVADPGEVDTAVERALASAEMGT
SEPVEYPDSVDPARVSSCDPSAVDEDELWDLLEAVVNEVSDDVTITSVSVTGVRRRVIFRTPSDQAEREESSVTVSLDVI
GEFSGFAWDTAVGPRDIDPELLAREASEMASEAPKERVSGGELAVAFHPRAFSELLTYVLIPALSGLEVLKGTSGFDRGD
IGRKVGPESLRVVNDPTLDRRPGSYAFDDEGSTPKRMELISDGILRSFYTDLYSSRRLGMESTGSGLGIRRPEPSPANVI
VQGDASEEEVLEEADLIVYRTLGAHTASKVSGRFSVTALWAETVEGRAVPVSVRGNLYSSLRDALISEETERTGVVEPPY
ALLRCRVG

Specific function: Suppresses The Inhibitory Activity Of The Carbon Storage Regulator (Csra). [C]

COG id: COG0312

COG function: function code R; Predicted Zn-dependent proteases and their inactivated homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789640, Length=153, Percent_Identity=32.6797385620915, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002510 [H]

Pfam domain/function: PF01523 PmbA_TldD [H]

EC number: NA

Molecular weight: Translated: 44102; Mature: 43971

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS50881 S5_DSRBD ; PS00187 TPP_ENZYMES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDDPLSQFEPGRAVLLEVETERVEVERTHDTGDRGRVSADRTIVVRVSTDGGLGVATV
CCCCCCHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEE
ADPGEVDTAVERALASAEMGTSEPVEYPDSVDPARVSSCDPSAVDEDELWDLLEAVVNEV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
SDDVTITSVSVTGVRRRVIFRTPSDQAEREESSVTVSLDVIGEFSGFAWDTAVGPRDIDP
CCCEEEEEEEECCEEEEEEEECCCCHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCCCH
ELLAREASEMASEAPKERVSGGELAVAFHPRAFSELLTYVLIPALSGLEVLKGTSGFDRG
HHHHHHHHHHHHHCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC
DIGRKVGPESLRVVNDPTLDRRPGSYAFDDEGSTPKRMELISDGILRSFYTDLYSSRRLG
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
MESTGSGLGIRRPEPSPANVIVQGDASEEEVLEEADLIVYRTLGAHTASKVSGRFSVTAL
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCEEEEEECCCCHHHHCCCCEEEEEE
WAETVEGRAVPVSVRGNLYSSLRDALISEETERTGVVEPPYALLRCRVG
EEHHCCCCEEEEEECCHHHHHHHHHHHHCHHHCCCCCCCCHHHHEEECC
>Mature Secondary Structure 
ALDDPLSQFEPGRAVLLEVETERVEVERTHDTGDRGRVSADRTIVVRVSTDGGLGVATV
CCCCCHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEE
ADPGEVDTAVERALASAEMGTSEPVEYPDSVDPARVSSCDPSAVDEDELWDLLEAVVNEV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
SDDVTITSVSVTGVRRRVIFRTPSDQAEREESSVTVSLDVIGEFSGFAWDTAVGPRDIDP
CCCEEEEEEEECCEEEEEEEECCCCHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCCCH
ELLAREASEMASEAPKERVSGGELAVAFHPRAFSELLTYVLIPALSGLEVLKGTSGFDRG
HHHHHHHHHHHHHCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC
DIGRKVGPESLRVVNDPTLDRRPGSYAFDDEGSTPKRMELISDGILRSFYTDLYSSRRLG
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
MESTGSGLGIRRPEPSPANVIVQGDASEEEVLEEADLIVYRTLGAHTASKVSGRFSVTAL
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCEEEEEECCCCHHHHCCCCEEEEEE
WAETVEGRAVPVSVRGNLYSSLRDALISEETERTGVVEPPYALLRCRVG
EEHHCCCCEEEEEECCHHHHHHHHHHHHCHHHCCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]