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The map label for this gene is ymdB [C]

Identifier: 20094386

GI number: 20094386

Start: 911951

End: 912499

Strand: Reverse

Name: ymdB [C]

Synonym: MK0950

Alternate gene names: 20094386

Gene position: 912499-911951 (Counterclockwise)

Preceding gene: 20094390

Following gene: 20094381

Centisome position: 53.84

GC content: 66.85

Gene sequence:

>549_bases
ATGGAGCTTGAGAGGGTCGCCGAGTTCGAATTGGAGGATATAAAGGTCGTCGTTTTAAGAGGGGATATAACCGAGCTCAA
CGCCGACGCCGTCGTCAACCCCGCCAACAGCCGCGGCGTCATGGGAGGTGGCGTAGCGGCGGCCATCAAGGCGAAAGGTG
GGGAGGAGATCGAGCGGGAGGCGATGGAGAAGGCGCTCATCCCGGTCGGAGAGGCCGTCGAGACCACGGCGGGTGATCTC
GACGCCGAGTACGTGATCCACGCCCCCACCATGGAACGGCCGGCCCAGAGGATCGGCGTCGAGAACGTGCGCGAGGCCAC
GGAGGCCGCGCTCCGGAAGGCCGAAGAACTCGGCGTCGAGTCGGTCGCGTTCCCGGGGATGGGCACGGGAGTGGGCGGCG
TACCGTACGAGGACGCCGCGGAGACCATGGTCGAGGTCATCGAGAGGCTGGCACCCGAGCTGGAGAGCGTGAGGGCGGTG
TACCTGGTGGGGTACGAGGAGGAGCTGGCGGAGGCGTTCCGCAGGGCGTTGGAACGGAGGGTCGGGTGA

Upstream 100 bases:

>100_bases
CCCGCTGACGAGTACGACGGGGCCCGAGGCCGATGGGGACCACCGTGCCAGCCGAGATGTGAGGAGACGACGGGGTTGCC
GAGGCCCGGGGGCGGATCGC

Downstream 100 bases:

>100_bases
CCGCGCCGGCCTCCGGGATCTCCCATCGATAATCACGACATGAGACGCGCCGTAGGAGCACGTCAAGACAGGGATCGAAC
CGGTTAATTCACCGGTACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MELERVAEFELEDIKVVVLRGDITELNADAVVNPANSRGVMGGGVAAAIKAKGGEEIEREAMEKALIPVGEAVETTAGDL
DAEYVIHAPTMERPAQRIGVENVREATEAALRKAEELGVESVAFPGMGTGVGGVPYEDAAETMVEVIERLAPELESVRAV
YLVGYEEELAEAFRRALERRVG

Sequences:

>Translated_182_residues
MELERVAEFELEDIKVVVLRGDITELNADAVVNPANSRGVMGGGVAAAIKAKGGEEIEREAMEKALIPVGEAVETTAGDL
DAEYVIHAPTMERPAQRIGVENVREATEAALRKAEELGVESVAFPGMGTGVGGVPYEDAAETMVEVIERLAPELESVRAV
YLVGYEEELAEAFRRALERRVG
>Mature_182_residues
MELERVAEFELEDIKVVVLRGDITELNADAVVNPANSRGVMGGGVAAAIKAKGGEEIEREAMEKALIPVGEAVETTAGDL
DAEYVIHAPTMERPAQRIGVENVREATEAALRKAEELGVESVAFPGMGTGVGGVPYEDAAETMVEVIERLAPELESVRAV
YLVGYEEELAEAFRRALERRVG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=170, Percent_Identity=33.5294117647059, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI154813199, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI13569840, Length=141, Percent_Identity=34.7517730496454, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI20336746, Length=162, Percent_Identity=31.4814814814815, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI226371710, Length=180, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI226371706, Length=180, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787283, Length=174, Percent_Identity=34.4827586206897, Blast_Score=84, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17538214, Length=167, Percent_Identity=31.1377245508982, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19522; Mature: 19522

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELERVAEFELEDIKVVVLRGDITELNADAVVNPANSRGVMGGGVAAAIKAKGGEEIERE
CCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHEEEECCCCHHHHHH
AMEKALIPVGEAVETTAGDLDAEYVIHAPTMERPAQRIGVENVREATEAALRKAEELGVE
HHHHHHCCCCCHHHHCCCCCCCCEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCH
SVAFPGMGTGVGGVPYEDAAETMVEVIERLAPELESVRAVYLVGYEEELAEAFRRALERR
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHC
VG
CC
>Mature Secondary Structure
MELERVAEFELEDIKVVVLRGDITELNADAVVNPANSRGVMGGGVAAAIKAKGGEEIERE
CCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHEEEECCCCHHHHHH
AMEKALIPVGEAVETTAGDLDAEYVIHAPTMERPAQRIGVENVREATEAALRKAEELGVE
HHHHHHCCCCCHHHHCCCCCCCCEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCH
SVAFPGMGTGVGGVPYEDAAETMVEVIERLAPELESVRAVYLVGYEEELAEAFRRALERR
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHC
VG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]