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The map label for this gene is Ssh10b_1

Identifier: 20094152

GI number: 20094152

Start: 680294

End: 680575

Strand: Direct

Name: Ssh10b_1

Synonym: MK0715

Alternate gene names: 20094152

Gene position: 680294-680575 (Clockwise)

Preceding gene: 20094134

Following gene: 20094154

Centisome position: 40.14

GC content: 58.16

Gene sequence:

>282_bases
ATGGCAGAGGAGGAGAACGTGGTATACGTCGGCAGTAAGCCCGTCATGAACTACGTTCTGGCCTGTATTACGCAGTTTAA
TGAGGGCGCCAACGAGGTCCGGATCAAGGCGCGTGGCCGTGCGATCAGCCGTGCAGTCGACGTCGCGGAGATCGTCAGGA
ACCGCTTCATGCCCGAGGTCGAGGTCAAGGACATTAAGATCGGTACCGAGGAGCTAGAGACGGAGGAGGGCGACACCGTC
AACGTGTCTACGATCGAGATCGTGCTCGAGAAGCCCGTGTAA

Upstream 100 bases:

>100_bases
CACCCGGTCCGTGTGGCGCGTTCCCGAAACTCATTTACCAGATCCACGGCACTGCGCACGGTCCAGCCCTATAATCAGCG
AGCTAGCGGGGGTACACACC

Downstream 100 bases:

>100_bases
TCGGGCTTTTTAACCCTGTCATTCTCCTCTCAGTCCTTCTAATTCTCACGCGAACCGGGACCGGTACCGGGAGCGCTACG
CCCGGATGACTCTCAGATTC

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MAEEENVVYVGSKPVMNYVLACITQFNEGANEVRIKARGRAISRAVDVAEIVRNRFMPEVEVKDIKIGTEELETEEGDTV
NVSTIEIVLEKPV

Sequences:

>Translated_93_residues
MAEEENVVYVGSKPVMNYVLACITQFNEGANEVRIKARGRAISRAVDVAEIVRNRFMPEVEVKDIKIGTEELETEEGDTV
NVSTIEIVLEKPV
>Mature_92_residues
AEEENVVYVGSKPVMNYVLACITQFNEGANEVRIKARGRAISRAVDVAEIVRNRFMPEVEVKDIKIGTEELETEEGDTVN
VSTIEIVLEKPV

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALBA1_METKA (Q8TXF9)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613999.1
- ProteinModelPortal:   Q8TXF9
- SMR:   Q8TXF9
- GeneID:   1476816
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0715
- NMPDR:   fig|190192.1.peg.712
- HOGENOM:   HBG727709
- OMA:   STIEIVL
- ProtClustDB:   PRK04015
- BioCyc:   MKAN190192:MK0715-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_01122
- InterPro:   IPR013795
- InterPro:   IPR002775
- PIRSF:   PIRSF028732
- TIGRFAMs:   TIGR00285

Pfam domain/function: PF01918 Alba

EC number: NA

Molecular weight: Translated: 10381; Mature: 10250

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEENVVYVGSKPVMNYVLACITQFNEGANEVRIKARGRAISRAVDVAEIVRNRFMPEV
CCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
EVKDIKIGTEELETEEGDTVNVSTIEIVLEKPV
EEEEEEECHHHHCCCCCCEEEEEEEEEEEECCC
>Mature Secondary Structure 
AEEENVVYVGSKPVMNYVLACITQFNEGANEVRIKARGRAISRAVDVAEIVRNRFMPEV
CCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
EVKDIKIGTEELETEEGDTVNVSTIEIVLEKPV
EEEEEEECHHHHCCCCCCEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014